RNA id: AMCG00008499


Basic Information

Item Value
RNA id AMCG00008499
length 3605
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00008499
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2787868 ~ 2793880 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCAGTAACCCGGCACGGTGCCGCTGCGGGACAGGGGGTGCCAAGGAAGACACGACACGGCTTTCTGTAGTTTTCGGCAAACTTGTTTGTTCACTCCAGAGCGACCCAGTGAACGCACAGCCGGCAGAACAGCCCTCCCTGCACAACGCTACGATACCGGCTCCCTCTTGTGGTCACACGGGGTCCATGTAATTCCAAAATAAAGTGCGGAGAAAAAGAGGAAACCTGTAAGCGCTGGACTGGGGCCGGATTGCACACCTCGCCTCTCTGCATTCGGTTCTGCAGTTTGGGGCGGCGAAACGGGGCCAGAACTGGTTATATCCCAACGCAGGTTATCATTCTACCGGGaagctgtgatttttttccctttgctgATATTTTTGTGGCAGTTGGTGTCTTTGGCCAGCCCGCTCGTGCCTTCTCTGTTATGAGTGACATTTAAAGGGCTATCAGAACAAACCCCCCTGCAGCCCCCCGAGAGCGGCAGCATGGAGGTGACGCCCACCATGGTGACCCCCGGGGCCCCGGCGCGGCGGCTCTTGCGCGTCTTCCGGGAGTACCACAACAATGCCATCATCATGGAGCACTACAACTACACGGGCAAGCTGAGCGGGAACCGGTACAAGGACGGCCTGAAGCCAGAGGCCATCATCTTCCTCATCATCTGCCTGCTCATCGTGGCGGAGAACTCGGTGGTGCTCATCGCCATCTGGAGGAACAAGAAGTTCCACCTGCCCATGTACTACCTGCTGGGCAACCTGACGCTGTCCGACCTGCTGGCCGGCTTCACCTACATGGTGAACATCGTGTTGTCGGGGCCCAACACGCTCAAGCTGACGCCGCTGCTGTGGTTCCTGCGGGAGGGCGGGGTGTTCATCACGCTGGCCGCCTCCATCATCAGCCTGCTGGCCATCGCCATCGAGCGCCACGTCACCATGGTGAAGATGAAGCCCTACCACGGCGCCAAGAAGGGCCGCATGTTTGCCCTGATCGGCGCCAGCTGGGTGCTGTCGGTCTTCCTGGGGGTGCTGCCCATCATGGGCTGGAACTGCATCGAGTCTCTGGAGGAGTGCTCCACCGTGCTGCCCCTCTACTCCAAGAGCTACATCCTCTTCTGCATCACCATCTTCATGGCCATCCTGCTGGCCATCACCGTGCTCTACGTCCGGGTCTTCCGCATCGTCAAGACCAACACGCAGCGCATGGGCACCCTCCGCAAGGGCATGGCCCGTAAGTCCCAGAAGTACATGGCGCTGCTGAAGACGGTCACCATCGTGCTGGGTGTCTTCATCGCCTGCTGGCTGCCCCTCTTCATCCTCCTGCTGCTGGACTTCTGCTGCCAGGTGCAGCACTGCGAGATCCTGTTCAAGGCGGACTACTTCCTGGGCATCGCCATGGTGAACTCCCTGCTCAACCCCATCATCTACACTCTCACCAGCCGGGACATGAGGAGAGCCATCCTGCGGCTCCTGTGCCGGCAGTGTCTGATCTCCAAGGATGGGCAGGTGAAGAAGTTCGGCGTCCCCTTCCTGGAGTGCAGCACCAGCAAGTCAGAGGTCATCTCCCACCGGCTGGAGGGCCTGGAGACGACGCTGTCCTCGGGCAACGTCACGCCCTCCACCATCAAGGCGCTGTACCCGCGGATCCTGAAGAGCTGAGTGCGCCGGCCTCAGCTCCCATCTCATGGGTCCACCTTCACGCACGAAGCAAGAGCTCTGGGCTGCGGAGGACGGCTCGTTTGGTTTTTGTTCTCAACGTTGTGTCCTGAGGTTTGGGTGCAAACCTGTGTAGGACACTAAAAAAAGACTTGCCGACTCCAGGGGCACCAAACCAATCCCAGTTGCAAACTCAAAGCATCAGTGTTACATAGTCTTGAGATTTGGTGGCCCCTTAACTCCCACCCACAAGAGGTAGCATTTGTTCTAACGCAAGTCTTCTGCCAATGACTGCCATTGTGCTCCAGCAGTAGGATGTGACTGGCCCACTGTAGCCAAAGACAGGGCTCGAGGGGTTGTAAAGTTCCTCCTCTGTCATCGGGACAATCCCAGCTTCCAGACCACATGTGTCTGACGTGCACAGTCCCAGAGAAACCGTTCTCCAGATGCATCGCCTCATCAGAAGACAGATGAAAAGGTGGGACTCTGGATCGTGAGCAATATACGATCATCAAGAGGGgaacttaaaaatgaaaccaaaaagaCATATGTGGTTTACAATCCTTCACTTGTTTAATTACCTTGTCAGAATCCCTGCCAGCAGGTGAATTATTAACCCCAGCCTTCCCAAGGCCGTGTTGAGTTACAGGCCACGCTTTCTTCTGTAGCCGTGAAGCAAAGCAGTAAACATCCCTCTGTATTTCCTGGTTTGGAGTCCAGGGCCAGCTGCACTGCCTGACCGCTGGCTTCTCCTCCTGGGTGCTGAACTGGTCTGGTCTGGGCACAAGTTCAAGGCCTATTTCACAAAGAAAAGAGCAGATCATCTGTCCGCTTTTCAATTAGCACTTTCACAGCACTGGCGCTCAGGAActgtattaaagtattaaagaGACTTGGCCGGAGAGGACTTTACCGACCGGTTTAAAGACAAGTTTCAAGCACTTATGAGCTGAAGCGTAGGGAACTCTTTACATCATAGAGGGCCAATCAGGGTTATGCATGGGCCCCCCAGGGGTAGAGAACACTTTATTGCTTTCCCCCTCCCTTTTAAAGCCACTAGCAttattctgtttctttaaaaaggCAACAGACTATGAGACTAGTAGATTGATGAATACCCAAAGAGCACATTGttgtttaatttctctctctctctctcatctacTGTTCTCTATTGACACCACCCACCCCTGCGCCACCCCTGAGTTTCAGAATCGCCGGGTGCAATTCAGGTCTTTTGGTCTGAGACCACTTCCTCTATAAGGTTACAAAAACTTAGCCAACCCGAATATAACGGAGAGTGGCGTTCAGTGGGTCGCGTGCAGTGGGTCGCTTTTTCTACTGGTTTCTCTTTCTGAGTTTTCTTTTGTCTGAAGGCGTCCCCCACACGTGAAATCATGCGGAGTCTGAGAGAGCAGTTTCAAGGCGTCTTTCTCTCATTCGATTGTCTTGGTCCTTATTGTCCTTATTGTTTTTATGgacaaactaaaaactaaaacataacaaatactGTCCCAAAGAGTTTGAAGAGTTCCCTTGTCTCTCTTGATCCAACTTGTAATGCAAATACTTTGTTCCTTCACTAAAAGTAGCCTTGGAAATTGTCCTTCAAGAAAAGCAATACAGATGTACGATtagtagtgtttattttattagctaGGAATAAGAGGTCAGACGTTTGGTTTTAACACTTTATACACACGGTATGTCACACATTTCTGAAGATCTGAAATGTTTCAAAAAGCCCAGTGTGGCGATGTTGTAAATAGGGTGTAGATTAatacaaagaaatatatttgtaagtACTGTTAataccttttttatatatatattttgtatgaaaacTGAAATTTTGAAAAAAGCgctttctgtttttgaatgatttttattttgtttgatcagttattatatatatatatatatatatatatatatacataacttAAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61817 lncRNA upstream 323201 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 574375 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 579391 2163319 ~ 2208477 (+) True G49321
TU61586 lncRNA upstream 712219 2068057 ~ 2075649 (+) True AMCG00008473
TU61609 lncRNA upstream 877449 1908823 ~ 1910419 (+) True G49294
TU61966 lncRNA downstream 18294 2812174 ~ 2812893 (+) True G49541
TU62010 lncRNA downstream 91951 2885831 ~ 2886138 (+) True G49582
TU62038 lncRNA downstream 115782 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 116814 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 234098 3027978 ~ 3042595 (+) True G49636
AMCG00008493 mRNA upstream 67207 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008489 mRNA upstream 157669 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008487 mRNA upstream 271359 2515229 ~ 2516509 (+) True AMCG00008487
AMCG00008483 mRNA upstream 357087 2424395 ~ 2430781 (+) True AMCG00008483
AMCG00008485 mRNA upstream 365859 2420340 ~ 2422009 (+) True AMCG00008485
AMCG00008498 mRNA downstream 4660 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008497 mRNA downstream 21516 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008505 mRNA downstream 110679 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008509 mRNA downstream 201061 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008510 mRNA downstream 222576 3016456 ~ 3019921 (+) True AMCG00008510
TU61936 other upstream 17824 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 576354 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 644558 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 682295 2091961 ~ 2105573 (+) False AMCG00008475
TU61614 other upstream 851366 1930654 ~ 1936502 (+) True G49298
TU62012 other downstream 92886 2886766 ~ 2888896 (+) True G49583
TU62528 other downstream 1362208 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1368178 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1768111 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2802143 5596023 ~ 5596799 (+) True G50215

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051233 True 1203 mRNA 0.50 1 NC_007114.7 19365879 ~ 19367081 (-)