RNA id: AMCG00008500


Basic Information

Item Value
RNA id AMCG00008500
length 1870
RNA type mRNA
GC content 0.59
exon number 2
gene id AMCG00008500
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2832719 ~ 2835316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCTCACGAAGGTCTCATTATAGTTAAAACCCGCACCTGCTTTGCAGGGTCTTTAACCCGCCGCGGCCCGGCTGCTGCTGCGCATGTCCGCAACTTGAAAAGCCCGCCTTCCGCCGAGCGCTCCCATTGGCCGGCCTGGAGGCGTTACCACGGGGACGCGGTGGCAACCATACGTTAGCCCCGCCCCATTCTCCCTATTTGGCGCGCCACGCCCTCGCCGGCGGCTGTGATTGGCGGAGGAGGAGGGCCGGGGCGAGCGGAGCGGAGCCGCGTTTAACCCCTGGAGCCAGTCAGCGCAGCCCGGCGGAGAGAGCCTGTGAGCCGGCTTCGACACAGGACACTGCGCGGAGCCCGTCCGCTtgatttaaatactgtttacGGCGCTGAGCCCGTCCGCCtggtttaaatactgtttacTCCACcgcaacaacagcagcagcggaGCAACGGCTCTCGAGTCCGGGAGCGGGGAGGCGACTGACTCCGCCTGGCGCTGCTGCTCTGAAGCCGCCGCTCTGAGTTCCTGTGTGGGCCGCTTCTCTGCGCGTCTGGGCGCGGGTATGGACGCCGAGAGGGGCGCTTCTCTCTCGAACGGCGCGGGCAGCTAGCGGAACCAGAACCAGGACCGGACCCGCCGCAGCCGGGCGCCCAGGACCCGGTTTCCCCAGGCTTTGCCCCCTGTCGACGTCACGGGCCGGGCTCCGCACCGGCGAGAGGGATGGTCCTGGAGGAGAGAGACGCCGGGAGGAGGCTGACGGCGGCGGCGGCCCGAGGGGACCTGCCGGAGGTGCGGAGGCTGCTGGAGGGGCAGCGCGTCCACCCGGGCACCGTCAACGAGTTCGGCCGGACCGCGCTGCAGGTGATGATGATGGGCAACAGCGCGGTGGCTCGAGCTCTGCTGGAACACGGCGCGGATGCCAACGTGCAGGACGGCCTGGGCATCACCCCCGCGCACGACGCCGCCCGGACCGGCTTCGCCGACACGCTGCGGGTGCTGCTGGAGTTCGGCGCCACGGTCAATGTGCCCGACCAGTCCGGCGCGCTGCCCATCCACATCGCCGCCCGGGAGGGCCACGCCGACGTGGTGGAGCTGCTGGCGCCGCTGTCCAACCTCACCCACCTGGACACCAGCGGCCACACGGCCCTGGACATCGCCCGTGCCACCTCCTGCCCGGCCGTGCTGCGGCTGCTGGAGCGCCAGCTGGAGGTGGGCCTGAGCGTCCAGGCGTAGCCGCTGGGCCGGTTCCTGCAGGACTGGTTCTGTTGTCGTGTTGCTTGGCTTCCAGCCCCAGTTGAAAGaaaattgttcttgttttacagaagaaaaaaggtgCTTTTACATGTTGGATAACTTTTAAAAGTCCCAAAGATATCACTAAGTTTACACAGATATGCAGGTTTAAAGCATTTCTAATTTGTGTTCTTatgtcattaattatttttttaacctggaCAGGACTGTGGCTGTATGAATTTTACCCGAGGATGTCCTCACTTGCGTGTGTAGAGGCTGTTTGGTTGGGTTTCCTTCTTGTTTACGTGTTGTACAGAATGTGTTTCAATGAATTTATTgctattataatatttatacgAGATTAATCTATGAACTGTTGTGTGTTGAATATTTCACTGttgaaagatgtatttatttggaagtGGAAACATAGCTTTGTGATATTTAaagtctaaaataaaacaattgcataCACTTACACCCAAGTGTCCTGCCATCTGAACTCCCAACGTCTTCAATCTCTCTACAGCAGGGGTGTcggactccagtcctggggggccgcagtgcctgagctcccaattacttcaTTAATGTCATTACTTAGTCAGACGGGCTTATCCAAAACCTCCATATCTG

Function

GO: NA

KEGG:

id description
K06623 CDKN2D, P19, INK4D; cyclin-dependent kinase inhibitor 2D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61973 lncRNA downstream 8743 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 130297 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 395962 2377005 ~ 2436757 (-) True G49462
TU61803 lncRNA downstream 472607 2359860 ~ 2360112 (-) True G49419
TU61798 lncRNA downstream 595858 2236527 ~ 2236861 (-) True G49414
TU62048 lncRNA upstream 74346 2909662 ~ 2910628 (-) True G49606
TU62058 lncRNA upstream 139633 2974949 ~ 2975153 (-) True G49614
TU62306 lncRNA upstream 538228 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 554887 3390203 ~ 3392090 (-) True G49806
TU62317 lncRNA upstream 578865 3414181 ~ 3443909 (-) True G49811
AMCG00008501 mRNA downstream 547 2824461 ~ 2832172 (-) True AMCG00008501
AMCG00008503 mRNA downstream 18696 2811361 ~ 2814023 (-) True AMCG00008503
AMCG00008495 mRNA downstream 98215 2731887 ~ 2734504 (-) True AMCG00008495
AMCG00008496 mRNA downstream 105595 2722474 ~ 2727124 (-) True AMCG00008496
AMCG00008494 mRNA downstream 122128 2709542 ~ 2710591 (-) True AMCG00008494
AMCG00008504 mRNA upstream 3779 2839095 ~ 2845891 (-) True AMCG00008504
AMCG00008502 mRNA upstream 19067 2854383 ~ 2872051 (-) True AMCG00008502
AMCG00008506 mRNA upstream 51451 2886767 ~ 2903195 (-) True AMCG00008506
AMCG00008507 mRNA upstream 75661 2910977 ~ 2913789 (-) True AMCG00008507
AMCG00008508 mRNA upstream 87569 2922885 ~ 2950000 (-) True AMCG00008508
TU61772 other downstream 747713 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 951757 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 982437 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1892067 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 1984673 841883 ~ 848046 (-) True G49054
TU62046 other upstream 71359 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 939267 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2913574 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2952434 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4112573 6947889 ~ 7151472 (-) False G50476

Expression Profile