RNA id: AMCG00008502


Basic Information

Item Value
RNA id AMCG00008502
length 6696
RNA type mRNA
GC content 0.50
exon number 18
gene id AMCG00008502
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2854383 ~ 2872051 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCCCCAATGTGCGCATTGACACCGACGGCACCGCAACAGGGGTTTGGAGAGACAGACGCACTGAGCTGATCTGAGCTGATCTGAGCTGAGCGTTGCGTTGCCCCCGTCGACACACTGCCGCGTTTAGAGGAATAAGAAGAAACCCCGACATGCTCGCCCTCGCTCGCCCGCAGACCCCGGGGATGGCGCTTCAGCTGCTGGGATGCATAGTGGTGTTCAGCGCCGGTCTCCTCCACACGCAAGCGGCCACCTGCTCGGCCGGGTATTTCCAGTGCAACAACGGCAAGTGCATCACCCAGCATTGGGTGTGCGATGGCCGAGACGACTGTGGAGACGGCAGTGACGAGATGGTGGCCATCTGCGCGGCCAAGACTTGCAGGCCAGACCAGTTCAGCTGTGGTGGGCGTCTGAACCAGTGTGTGCCCAAAAACTGGCAATGTGACGGCAAGGATGACTGTGAGAACGGAGCTGACGAGGAGGGCTGTGCGCCCACGAGCTGCACGGATGACGAGTTCCGCTGTGGAAACGGCAAGTGCGTGTCGGTGACGTTCGTGTGCGACGAAGAGGACGACTGCGGCGACGGCAGCGACGAACGCTCCTGCCCCGCCCCCACCTGCAGCCCCTCGTCCTTCCAGTGCAACAACTCATTGTGCATCCCGGCTCTGTGGGCCTGCGACGGTGACAGCGACTGCACCGACCACTCCGACGAGTGGCCCGAGAACTGCGGGGGCCACGCCGCCGCCGCCCCCTCTGCCCCCTGCTCCCCGCTCGAGTTCCACTGCGGCAGCAGCGAGTGCATCCACAGCAGCTGGCAGTGCGACGGGAGCTTCGACTGCGTGGACCACTCCGACGAGGCCAACTGCAGTAAGTCCACCTGCAGTCCCGACCAGTTCCAGTGCAACGACGGCACCTGCATCCACGGCAGCCGGCAGTGCGACCGAGAGTTCGACTGCAAGGACCTGAGCGACGAGCAGGGCTGCACCAATGTGACCAAATGCGAGGGCCCCACCAAGTTCAAGTGCCGCAGCGGAGAGTGCATCAGCATGGACAAGGTGTGCGACAAGCAGAGGGACTGCCGAGACTGGTCCGACGAACCGCTCAAAGAGTGCGATGCCAACGAATGCCTGAGAAACAACGGCGGCTGCTCCCACACCTGCAATGACCTCAAGATCGGCTTTGAGTGCCTATGTCCCGCTGGTTTCCGCCTGGTGGACAAGAAGCGCTGTGAAGATATCGACGAGTGTGCCAACCCCGACACCTGCAGCCAGATCTGCATCAACCTGGAGGGCAGCTACAAATGCGAATGTAATGAGGGCTACCAGATCGACCCGGTCAGCAAGTCCTGCAAAGCCATCGGGACGGTGGCCTACCTCTTCTTCACCAACCGCCACGAGGTGAGGAAGATGACGCTGGACCGCAGCGAGTACACACGTTTCATCCCCCAGCTGAAGAACGTGGTGGCCCTGGACATGGAGATTCCTTCTGACAAGATCTACTGGTCTGACCTCTCCCAGAAGAAGATCTACAGCACCTACATGGACAAGGCCGGGAACTCGTCCCATCACAGCACGGTGATCGACACTGAGATCCAGGCCCCCGAGGGCATCGCCATCGACTGGATCCACGGCAACATCTACTGGACTGACTCTGTCTTTGGCACCATCTCCGTGGCGACCACCGACGGCCGCCGCCGCAAGACGCTGATCAACGACGGGCTGACCCGGCCGCGCGCCATCGTGGTCGACCCAAAGCACAACTTCATGTACTGGACAGACTGGGGCATCCCCGCCAAGATCGAGAAGGGAGGGCTGAACGGATTGGACCGCCTGTCCCTGGTGACTGAGGGCATCGAGTGGCCCAACGGCATCACGCTAGATATGATGAACCAGAGGCTGTACTGGGTGGACTCCAAACTCCACACACTGTCCAGCATCGACGTGCTGGGCGGCGGCCGCCGGACGCTCATCGTGGACGAGAACAAGCTAGCCCACCCATTCTCTCTCACCGTGTTCGAGGATCAGGTGTTCTGGACCGACATCGAAAACAACGCCATCCTGAGAGCCAACAGNNNNNNNNNNGGTGACATCATCGCCGTGGTGGAGAATGTGGCGTCCCCCGAGGACATCGTCCTGTACCACAACCTCAAACAACCCACCGgtGTGAACTGGTGCGAGAGCAGCAACATCCCCAACGGCGGCTGTGAGTACCTGTGCCTGCCCGCCCCCCATATCAACGACCACTCTGCCAAGTACACCTGCGCCTGCCCCGACCACAAGACCCTGGGCCCGGACATGCGTTCGTGCGTGGCAGAAGGTGACGTCCCCCCAGTCTCCGTTCAACCCAAGGCCAACACCCCTCAACCCCCAGCCAGGACGACCCGCCGACCCCCAGCTACCACTAAATCCACAGTCGTCACCACCACCAGCACAGCGGCCCCTCCAAGGACAACCCCCAGCAACCCCAACAAGCCCCTCCAGTCCACCCAGCACGACTTGGACACCCAGAGAGACGCTCTCAATGGTGTGGCCACAGAAGCCCAAGAGGCCCACCCGTCCACCACCGCGCTCTACGTCATCATTCCCCTCGTGATCCTCTCTCTGGTGGCCTTCGGCGCCGTGCTCTTGTGGAGAAACTGGCGTCTGAAGAACACCAACAGCATCAACTTCGACAACCCTGTCTACCAGAAGACCACGGAGGATGAGGTGCACATATGCAGGACCAACAGCCAGGAGGGCTACTCCTACCCATCGCGGCAGATGGTGAGACAAGAGGAGGACATGGCGTGATGATGGACTGCACGGAGggggaagagaagaaaagatgagagggggagaaaaaaaatactgggTGGTCCAGCTGAATTTTTGCTGcttttcaaagatgtttttctAACCTCCCGAAATGCCCACCACAGACTGACCTCACCGCCGTGTCCTTACAGATGAgaagacagaaacaaagaactttttcttatttttgtgcagacaaaaaactaaaatgcttgAAATATCGATCATCCGTCCATCAACTTGATGAATCGTGGCAtcgaccaaaaaaaaaaaaaactaaagaaaaaaagatgttttataatttttttcttacaaatgaAGGAGCCGCGCAGGACTGATGAGATCTCGGGATGTAAGACCGCGACTAAGGGACACTTGCTTCCTAATCCTTTACGTCTGTTGGAAATGCACACGTTTTAGACTGATTGTAGACCCCGGCCTGCGAGAAAGTCATTGACTCTGGCATTGGCGGTCGAAACAAGTGACCAAAATACCGGAAACATCAATGAAGAACCAGGAAAGGGCAACCACTGAACCATGAAGGTttccgtttttgttttgtcttgtttttttttttttttctgtttattttgttcctcACTGAAGGTTGTATAGTTATGTCTTGCACTGTTTTGTTCTTGTCAATTTTCTATCTTTAAAAACTACCACAATGTGATTTTTAGAAACCATGGGCTTTTCTCGTGCCATATTCTGCAACACTAGAGACCTTTGCACTACAAGGTAAAGgtgagagggaggaaaaaaaaaaacatttgagttcTAGCTGGACATCATAGACGTTCGtgactttgtgtttttatcGCCAGACTTTCAGGAACGCTGCGATCCATGGTGCCAAAAGCAAACATTGCTCCGTGTTCGCGGTTTTCCTAGAAGGACCGAAGGGTGCAATCCTGGCTGCAACTAACCGCTGAAAACGCAAGCGCCTTACATAGCTTCGGTTGCTCGTGCCTAACTCTCACCGTGCCGAGCGGGCGAATCCCCCCCAGTAGAAAGTCCGCCACACGTTGGCCTCGGCGGGAGGGTGCCGCTTCGTCTGCTGTGCCTGTGTCCGTCCATAGTGCTCGACGGGAGTGAATCGCACAAGGTGTTCCTTTATTTATTGCGGCTTCGGTGTCGCACTCCTATGAGACCCAAGTAGCACCCGCTGGTGATGAGAGAGTTCTGAACCTGTTCTGTATGAATCTGGATAAATAAAAGGTCCTCTGTTCCCTCTAAAGGGGAAGACCCAGAGAAACTGCTCTTCTGTGTGTCAGTCCTGTTGAATCAAACTGTTCTTCAGCGCTGCACCTGCCAGATCCACTGGGTCTCAGTCCGAGTGAGGACTTGCTCTAAGAAGAAACTTTAGaccggtctctctctctctctctctcaaccccGGCGTGTGTGGAAAGGGGTTAGCCGCCATCACCACTCCCCATCCCCCCCAGAATGAAATATTTTCACACAAGCCTTAACCATTGATCAGCCAAGAGTAACATATCATGTGACCGCGTAGGCCTTTGACTTGTCATCTCTCACCATCGTGGGGAGGCTTCTGTGAAACCGCCGACTACTTCTCAGGAAAAGAAACCTCGAGTTGCCTTCTATCTATAGTAACTTCCTTAAGTTAAATGTGCTTATTATTTCTCTCCCACTGTTTTAAAGCCAAAAGGAAAGACCCCCATCAGCCCACTAGCTGGCCCAATCGCTACACAATTCACGAGTGACGGCAGTGGCCCAGCTCCGAGAAGGCCTTGACCGTGATTGAACCGAGCTTTCTTGAGTGACGCCGCTCTTCTGCATTCGTCACTTTTTGGTTTCCGTGTCTGCAGAATGTGCGAACACTCGATCGCTGCTGAACCACTAGTTTGTAGAGAAGCGAACCGTAGGGCACATTAGGCACATTTATGAAGAGGGGTTCAAATCTACCCTGCCTTACACTAGTGACACAACACAAGTAAGCaagcgttttttgtttttttcttactcTTGcggtgtgtgttgggggtggatacctttaactttattttcaatGACAAGCCATGTTAAAACAAATGGGAAGTCTTTTTGTCCCAAACTTGACTTTCAGTATAGTTTGGTTGGTTTTGATTGTGAATGTGTAAATTTGTAAATcttgtacatgtatatatactttcttttgcacagctgttttttttttttttcttgttatatttgtacattttgggATGGGAATTGTTGTACAGTAAATaagaaatggtttatttatttcaaaaaccACACGcctgccttgttttttttttcgaaCGTCATCTCCCTGGATTCGCCTTGTgcgagggggtgggggtgcagaTCGCTGCCGTTTGGTTTTATTGGTGTTTTTACTTTTGGGGGGCAAATGGAGCACCAATATAGGTTCCTTTAGAAATGTCTGAATCTAAACTAAGCTCTCATTTGTAGAAGCTTTGATTTGCCATTTACAATGTTGGGTTATTTAACGGGGAGTCATTAATGAGAACAGGAATATGTGGGGGGTGCATTATGTTCTAGAATAAAAACTGAATGGGGGATTAGTAAATCAAGTGATTATATAAATGACTTCAATACTGCTGTAAACATCTGAGATCTGAGACCAGCTAGTGCTGGTGCTGTCCATCAGTACAGGATCTTGAGGATTGAGGCAGCCATTGAGGAGAAAAGTAAACGTCTTAATATGCAAATCTTGCGTAAATTGACGGATACCTCACAATACACAAAGCGTGTAAGCGACATGCTACTGAGACTCGTTTATAAATAACTTGCATGCGGGGAAAAGAATAGTTTCAGGATTGGCGGAGAAGAAAAGCTGATATTTGTGGGTGAGGGGAacttgaatatgtatttaattgaggCAAAGTCAAATATTCACGTCCTCTTTGCCTCGGGCTTGTCGCTCCGAGTGTCTCTCCTGCTGCCTTTCCACTCAAAGCACAAATGGTTTGAACTGTGAAATACAAGTTCTGTGTGAGTTTGGTGTGATGCTGTTAACTATGATGTATTTGtgtagagcagtggttttcacctgccctgctggtttttgttccaactggactcataattgctttattaaatcctttaattgaactatcAATGCAATTATGATACAATTAAGAGCTaccagcagggcaggaggtACTCCAGTACCAGTTTGGGAATCCCTGGTGTAGAACATTATTTATGCGACTACATCGGAAATGGTAAAGAAACCACAAACTAAATtggtatattttactttattgatcATTAAATACTTAACAGAATAGcaaattttaaagtattttgaaagCCTAGATTGTTTAGGCAAAACTAGTTATTCGAGGGAGTTGTCAATGTCTGTAATGGCGTCTGGTCTCCAACCGGTATCCTGTGCCTGCCGTTTTCTTTCTGGCTACTGACCAAAAATGCTCAGGATTGTTTGGTATTCAAGTAACTTCTATCACTTTAACTTTGTGCGTCATTCTGTTCGCGTGGGTTGCGGCTGTGATGCTCCGCTTCCTTTCAACACCTTGAAAGGGGAGTTGATTTGTAATGTACTGTAGAGGGTGGAGAAATCCATCTGCATCATAAACACACCACTAGAATATTATGTATCAAGGGATGTGGCATATTGTATCACTATCCGGTGCAGATCAATGAAGCCTCACCAAaattttactatttaaaaaaaatatatattttaaacgcTGAAATTGTTTACAGCAACTTGTTGTAGCCCAACGTTTCTCTCCCACAACGTTTCTGatgcaaaatgaaagaaaaagcaagaactgtgttgtatttattaattaaattgtacaaaGAGATCTGCATTGTAAATACAAATGCctgttactgtatattttaaaagcagaacaagattgtttaaatattttatttgaatataag

Function

GO: NA

KEGG:

id description
K12473 LDLR; low-density lipoprotein receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU61973 lncRNA downstream 30407 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 151961 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 417626 2377005 ~ 2436757 (-) True G49462
TU61803 lncRNA downstream 494271 2359860 ~ 2360112 (-) True G49419
TU61798 lncRNA downstream 617522 2236527 ~ 2236861 (-) True G49414
TU62048 lncRNA upstream 37611 2909662 ~ 2910628 (-) True G49606
TU62058 lncRNA upstream 102898 2974949 ~ 2975153 (-) True G49614
TU62306 lncRNA upstream 501493 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 518152 3390203 ~ 3392090 (-) True G49806
TU62317 lncRNA upstream 542130 3414181 ~ 3443909 (-) True G49811
AMCG00008504 mRNA downstream 8492 2839095 ~ 2845891 (-) True AMCG00008504
AMCG00008500 mRNA downstream 19067 2832719 ~ 2835316 (-) True AMCG00008500
AMCG00008501 mRNA downstream 22211 2824461 ~ 2832172 (-) True AMCG00008501
AMCG00008503 mRNA downstream 40360 2811361 ~ 2814023 (-) True AMCG00008503
AMCG00008495 mRNA downstream 119879 2731887 ~ 2734504 (-) True AMCG00008495
AMCG00008506 mRNA upstream 14716 2886767 ~ 2903195 (-) True AMCG00008506
AMCG00008507 mRNA upstream 38926 2910977 ~ 2913789 (-) True AMCG00008507
AMCG00008508 mRNA upstream 50834 2922885 ~ 2950000 (-) True AMCG00008508
AMCG00008512 mRNA upstream 139806 3011857 ~ 3014067 (-) True AMCG00008512
AMCG00008513 mRNA upstream 149692 3021743 ~ 3023525 (-) True AMCG00008513
TU61772 other downstream 769377 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 973421 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1004101 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 1913731 931892 ~ 940652 (-) False AMCG00008428
TU61309 other downstream 2006337 841883 ~ 848046 (-) True G49054
TU62046 other upstream 34624 2906675 ~ 2908665 (-) True G49605
TU62371 other upstream 902532 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2876839 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2915699 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 4075838 6947889 ~ 7151472 (-) False G50476

Expression Profile