RNA id: AMCG00008505


Basic Information

Item Value
RNA id AMCG00008505
length 1341
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00008505
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2904559 ~ 2906941 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCCAGGTTGCGTCTCGGCCAAACTGTGGCGGTTTCTCCTCGCCGGGCTGCTGGTCGCGCTCGCCCTCACcgcagtgctgctgctgttggcaGGACAGTCGCTCCAGTATATGAGGGATAGAAGCATGACACCGGTGGGGAATCCTCATAGTGCCACCCCCAGCAGAGCCCAGGACATGTCACCTGGGGGGCtccacagagagggagaggggcagtCCGGGCTGGGCTTCACTTGGGACCCCCTCCCCTCCCGCCCTCCCCGGCAGAGCCGCCGACGTCACCACCACATCGTCTTCCTGAAGACGCACAAGACCGGGGGCAGCACGGTGCAGAACCTGTTGTTCCGCCTGGCAGAGAAGGAGGGCCTCACTTTCGCCTTCCCCTACTTCACCTACCAGTTCGGCTACCCACAGAGGTTCCGGGAGGAGTTCGTGGACGAGCTGCCGCCGGGCGCCTCGCAGTTCGACATCCTGTGCAGCCACATGCGGCTGGACCTGCCCCAGCTGCGGCGCATGATGCCCGCCGACAGCATCTACCTCACCATCCTGCGAGACCCGGTCAGCACCTTCGAGTCTGTCTTCAGCTACTACGCCTCCATGGTGCCAGCCTTCACGCTGGTGCAGAACCGGGCGAGCGATTCCCCCGGCGGTCCCGACCAGCGACAGCTCCTCGCAGCCTTCCTGGCGTCGCCCGAGTCCTACTACGACCCCGCAGACCCGAGCAACGGCCTGGCCCGGAACCCCATGACCTTCGACCTGGGTCTCGGCCCCCGCGAGTGGAACGCCAGCTGGGCGGGGGAGCTGGCAAAGCTGGCAGAGGCGTTCCACCTGGTAATGATCGCCAAGCACTTCGATGAGTCGCTGGTGCTCctcaaggagctgctgcagctggACTACCAGGACCTGGTGTATGTGGAGCTCAACGCCCGGCCCGGGCCCGACCGAGCCCAGCCCGACGAAGAGCTGCGCGCCCGGGTCCGGTCCTGGAATGCCCTGGATGTGCTCCTCTACGAGCACTTCTCGCGGCTCTTCTGGGAGAAGGCGCGGCGCTACGGGCTGCGGCGGCTGGCAGAGGGCGTACGGGAGCTGAGGGCGCTGGCGAGGCGGACGCGGCGGCGCTGTCTGCAAAGAGAGGGCGTCCCCCCTGGGGAGCTGGAGGACCTGCTGCGGCCCTGGCAGCCCAACTCCGCCACCATCTTGGGCTACGACCTGCGGGGCAACCTGAGTGCGCAGGAGCAGGGCTCGTGTCTGCGGCTGGTGCTGCCCGAGCTGCAGTACCACTCCTACCTGTACTTCCAGCAGTACGGCCGGGACCTGAGGTTGGTGCCGGCCGGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62010 lncRNA upstream 18421 2885831 ~ 2886138 (+) True G49582
TU61966 lncRNA upstream 91666 2812174 ~ 2812893 (+) True G49541
TU61817 lncRNA upstream 439892 2445185 ~ 2464667 (+) True G49431
TU61672 lncRNA upstream 691066 2212429 ~ 2213493 (+) True G49341
TU61648 lncRNA upstream 696082 2163319 ~ 2208477 (+) True G49321
TU62038 lncRNA downstream 2721 2909662 ~ 2910628 (+) True G49598
TU62039 lncRNA downstream 3753 2910694 ~ 2910939 (+) True G49599
TU62082 lncRNA downstream 121037 3027978 ~ 3042595 (+) True G49636
TU62224 lncRNA downstream 449758 3356699 ~ 3359529 (+) True G49738
TU62242 lncRNA downstream 507240 3414181 ~ 3443897 (+) True G49754
AMCG00008497 mRNA upstream 81463 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008498 mRNA upstream 93260 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008499 mRNA upstream 110679 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008493 mRNA upstream 183898 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008489 mRNA upstream 274360 2616463 ~ 2630199 (+) True AMCG00008489
AMCG00008509 mRNA downstream 88000 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008510 mRNA downstream 109515 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008514 mRNA downstream 113654 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008516 mRNA downstream 180239 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008515 mRNA downstream 212168 3119109 ~ 3124136 (+) True AMCG00008515
TU62012 other upstream 15663 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 134515 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 693045 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 761249 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 798986 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 1249147 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1255117 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1655050 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2689082 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2831600 5738541 ~ 5742750 (+) True G50243

Expression Profile