RNA id: AMCG00008509


Basic Information

Item Value
RNA id AMCG00008509
length 2565
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00008509
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 2994941 ~ 3003560 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGCCGAAGAGCAGGAGGATCTCTGTAGAAGACGCAGCCACTGGGTTCGCCTGCCCGTCTCTCTCGCAGCATCGCAGCAAAGCGGCCGGACAGGAGACTCGCACACACGGGCATCTCAGAACAGGTTGACGCAGGTGAAAAGATGAGTGCCAAAACGTGGCTGTCACTGGTAGCGGTGTCCTTCTCCATGCTGATTGGTTTGGCTTGGTGCCAAGATGGGGCGTGTCTCCAAGGTGGGAAACACAAAGCCACGCCCAGTCCGGAGCCATACCTGCAGGAGTGCACCCTCTACTCCGACAACGCCTGCTGTTCGGAGCAGGAGGCCCAGGAGATCGCCGCCACGCCCGCCTCCCGGGTCGATGATATCTACTGGGACAGGTGTGGCCCCCTCAGCGCCAGCTGCGAGGGGTTCCTGAAACGAGTGGCTTGTTTCTACCAATGCTCCCCAGACGCTGCCCGCTGGCCTCACCCTCACCGGCCGGCCGCCCTGCAGGGGGTGCCTCTGTGCCAGAGCTTCTGCCAGGACTGGTTCGAGGCCTGTAGGGAGGACCTGACCTGCGCACGCAACTGGGTGAGCGACTGGGAATGGAGTCCCCAGGGAAACAACTGCACTGGAAAGTGTGTGCCCTACCAGCAGatgTACAAGGACGGCAGGGAGCTGTGTGAATCGATGTGGGAAGACTCCTTCCGCATGGTGGAGGAGGGCGAGCCAACAGAGGAGGCGTCCTGCGGCTGCCTGACCCTCAGCCCCTCTGACCAGGAGGTGGTGGGGGCTCTGCGGGCCCAAGAGGGCAACCCCGACGAGCTGGACACCACCAAGAGCGGGGTGCCCCTGTACCCCGCACCCTGCCGCCGCCCCGTGCGGCCCCCGCAGGCCCGGGGGAGCAAGCGCAACACCCTGCTGCACAAGAGATCCATCTTCGTGGAAGACGTGGAGGGCAGCGGCAGCGGCTTCTAGGGATGTTCCAGGACCGGTCCGGAGTCTCCCCTGCACCTGCCCTGCCTGTACCCCCGCCCCCCAtcccctcctctccctgttGCCCACGCCCTCGGCTTCTGAAGAAACGCCACCTGTTTTGAAGAGCTGGTTGACTAGGGGATCTGTGTGGCATGATCTCATTGTGCGCCTCGTAAAGTAAGCAACCCAAAACTGCTTGCATAAAACACCTTGTGTACTATTTAATGCcacaaatatatgcatacacatcTATTTATAATGCTCACAGGTACATGTCTTGTTTAGTTACACCCTCAAAAAGAAGCAGCACTTTAACTTGAGGTGTTTTGTGCAACCAGGCTTCTCGGCAGCAGCGGTTACTCTGTGAGGATGACGGACCAGTAAAGCCACATGGGCAACCGTAGAATTACTGGACCATTTCAGCCGATATAAGAAGCTGCTAGTGACGCAACAAGGACACCAGAAGGAAGGTTTTGCGTTGGGGGTATTGACAAGGGCATGGTCTCCAGGGGGCTCCCCAAGCTCAGGCACCCACAACATGTCCCACCCCGAGCCAGTCACCTGACCTCCTTGCGCTCCGTCCTTCAGACAAGGCGAGGCAGACCGAAGTCCCGCTGTCAGTGCCCAGGCCGCAGTCGCTGCTGGTGATGTCATAGCTCACCCTCCAAGTCTCCGAGTCTTTCCCAATTccagtgtctgctaaatgacttcGGGTACAGCTCTGCCAGTTTAGGTTCAGCCTTGGCACACCCCTCCCACCCTTCTTGCTAGCTCTGTAATGCACGTGTACTCGTCTACATTTCATAGGGGGAAAACGGCAGTTCCAGGGAGGGAAGCGGCTCCGGGGACATTCCCGTTCATTGTCCCGGTGATGAGAAGTAAGAGCAAAACTTGGATGCAGAGGCGTCGATAAATCCACATCCCTCAGCATAGTAGCTCTcgtgtttctttaaaaacaaaactacatatATATCTCTCATGTATTCTCTCATGTCTGTTATCCTGCCACAACGCTACTTCCTTGTGGACGAATGCTTGGTGATTTGgctttttttgtgtctgttaCTGTTAACACACTTCACTTAGATCGCCCTGTGAAGGACATGCGTGTGAAGACTTGAATGCCATTGCAGATTCATACCGGCTCTTAGACAAAGAAGCACAAGAAAAGTCAACCCTGAAAACGACAAGCTTTTGCACAATTTTCTTTTAActctgaataaaaaacagaactaCACTCGGCCTCAGGTGTCCAGAAAATCttttaaaccattaaacaaATGATCACTTAAGGCATCTagaagcattatatatatatatatatatatatatcagtataaAACACGCCTCGGGTCATTTTTCAAGCTATAGCATAGACTGTCAAGCAGGTTTAGTAGTAAAGTCAATCTGTATTTAAAACCCCGCAACAACCTTAGAACACATGAAGACAAATCGACAGCCAACACGTGTCCCGTTGCACACGTCTGAAAGCTCGTGTGTCGGACCGCTTCAGCTGTTGTGTGGTCGATGTGTGTCACCTTCACTTCAAAGTGTACTGTATTGCGTTTCTTTTCTGAGCGCTGAATAAAGATTGGGTTTTAATTGTC

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62039 lncRNA upstream 84002 2910694 ~ 2910939 (+) True G49599
TU62038 lncRNA upstream 84313 2909662 ~ 2910628 (+) True G49598
TU62010 lncRNA upstream 108803 2885831 ~ 2886138 (+) True G49582
TU61966 lncRNA upstream 182048 2812174 ~ 2812893 (+) True G49541
TU61817 lncRNA upstream 530274 2445185 ~ 2464667 (+) True G49431
TU62082 lncRNA downstream 24418 3027978 ~ 3042595 (+) True G49636
TU62224 lncRNA downstream 353139 3356699 ~ 3359529 (+) True G49738
TU62242 lncRNA downstream 410621 3414181 ~ 3443897 (+) True G49754
TU62240 lncRNA downstream 426337 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA downstream 440442 3444002 ~ 3445127 (+) True G49753
AMCG00008505 mRNA upstream 88000 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008497 mRNA upstream 171845 2815396 ~ 2823096 (+) True AMCG00008497
AMCG00008498 mRNA upstream 183642 2798540 ~ 2811299 (+) True AMCG00008498
AMCG00008499 mRNA upstream 201061 2787868 ~ 2793880 (+) True AMCG00008499
AMCG00008493 mRNA upstream 274280 2715820 ~ 2720661 (+) True AMCG00008493
AMCG00008510 mRNA downstream 12896 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008514 mRNA downstream 17035 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008516 mRNA downstream 83620 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008515 mRNA downstream 115549 3119109 ~ 3124136 (+) True AMCG00008515
AMCG00008517 mRNA downstream 128320 3131880 ~ 3137332 (+) True AMCG00008517
TU62012 other upstream 106045 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 224897 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 783427 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 851631 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 889368 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 1152528 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1158498 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1558431 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2592463 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2734981 5738541 ~ 5742750 (+) True G50243

Expression Profile