RNA id: AMCG00008515


Basic Information

Item Value
RNA id AMCG00008515
length 2963
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00008515
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3119109 ~ 3124136 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGTGGGCGGGGTCCGTGGAGATGATGAGCACGCTCTCGCGCACGGACGCCAGCTGCACGGCCAGACTGCAGCTGCACAGGGGAGAGAAAGCGCACAGGGGGCGCACAACACGGGGTTATTCGAGGTCACGGCTGAGGAACGACGGGGTCAATGGGTGCAGCATGACAAGACACCTAGTGGTTTTGCCCACGCCGCCTTTGCCCCCCACGAAAATCCATTTGAGCGACTTCTGCTCGATGATGTTTTTCAATGTCGGCTCCAGCGGCTCCACATCAGGCGCATCTTCATACTCTTCTTCTACTGAGGCTGCCATCTTGAAAACCGGGTCAGGCTGGCGGCCGTACCAAGGCTTATACGTGCGGAGGGGTGCGAGCTGGGCCAGCGGGAGTAGGGCGCCATTTTGGCTCAAACTTGAAGCCAGCGCTGTTGAGAACACGTCGCCCTGGCTGGAGCCAACATGGCGAGGGAAGTTGCCTATAGTTTACGTCATGGTTCATACCAACTTGTCCAAAAAGGGGAGAATAGTCACCGTCATTCATTACGCTGCTTCCGCCTCCCTGTGTTACgcctcctctgattggctgtcTCCTCAGCCGCTGAGGACGTCACTGAAGCGTCTGTAAAAGCAGGAAACAATGCGACGGAAGCGGAAGTGACTCGCACGCCGCGTCATCAGCATAAGCGCAAGCTGAAAGGCCCTGAAAAGGGACCTGCGTGGCCGCCATTGTGGCTCTGGACGTGCTATTGTCCCGCACCGTTGCATCGGTTTGACGCTGGAGCCACAATGTCGTCCGTTTCGCCGTGAACTTTGCAAACCCCGTGCAACGCCGCGCTTCGGGGAATTACTGAAATCCAAGATGGCCGACGGCAGCAGAAAGGAGAAAAACttctagaagaaaaaaaaaacctacaacaAAATTCATGAAATATTCACCGGAGGAAGACGCAGAGCCGGTGCGCGGTTGTGGGGATACGAGTGCGATTGACCGGGGCAGAGGGAGCGGGGCGCCGCGGACACTTGTACTGCAGGTTTAACGTGTCGATGCGGAGATAGAGCTGCATTTGCGTACGTCCGTTCGGGATCCGTCGAGGTTTTTGCAGCCCCCCAGGTGTGAGAGCTGCACCGGGGCACCCCGACATACTGCGCCCGCTGAGCTCGTTATATGTGCGTCGCCAGGCTGAACTACGTGCCTAATTATATGGTGGCTCCCGGAACACGCCACGGAGCTGAGATCGTGCAAACACACCTCGTCTCACACCGGCGCAGGCATCTCAGCCCCCGGCCACGCCAGGACGACGGACTGGCGACGTTGATGACCATAACAATGGACCCACACCGGAGCAGCAGTGGCAAAAGCAgccaaagcagcagcagcagccgccacCACCAGCACcgccacagcagcagcagcgactCGGCCACCTCGAACAGCCCCGGCTCCCCCGCCAGCCCCAGCGTCGGCGCGGCGTCGGGGGCCAACGTGTTCGCCAACGACGGCAGCTTTTTGGAGATGTTTAAGAAGaagatggaggaggagaagcggaggaaagagatggagggaggcCGCAGCGAGCAGAGGACGGCGCAGGACGGGCCGCCGGCGCAGGAGAAGAAGCCCGTTAGCGTGACCAGCATTGTAAGGGGGTTTGGTAGTTCATCCCGGCCAGGCCAGGCAGCAGCCTCTGCTCAGAGTTTGCTTACACGGGGGTTAATAGCAGCTCGTAAGACTTGATCCAGTGCTAGCGTGATTGCATTTATGTGTGCACAcatgcaaaaatacaaagaagCGACACCAAAGACTGTTTATTGTCCAGCTGTTACATTATTAGCTACCTGTATCTCACCTGGGTTTGCTTTCTACCCTCGGTGAGCTTTTCTTGCGTGACTGTTATGTAATAACGCACGTAcacaaagaaagggaaaatgCCAAGTCGGAGCTCATTTGCAATACGAAGTGTATCCAGTTACTTAATGTAACGGTGATGGTCGATACTGCCTTCTTTGTAAGCGTTTCCACCCCCTCCCGTAACGCCTCAGTGCTTATGAAAGCGCAAATAGACCCGAGGGGGCAGCGATTGGCGTGCAAGGTGTGGTTGCTCAGGTCTTAACTGTAGGCTCCCCTGACACGTAGTGGCCATCATGGCCGTGGTCCCCCCGAAGGGCCCGTGTAACGGTTACAGTCTTGTGTCCCTTAACCCAGGTGGGCAAGCGGAGAGGTGGAGCCAAGCTAGCCCTCAAGACCGGAATGGTAGCCAAGAAGCAAAAGCTGGAGACTGAGATTGACACAACTAAAGGAGACGCTTGGACTAAATACATGGCAGAGgtcaaaaaatacaaagcccacCAGTGTGGCGACGACGACAAAACTAGACCTCTGGTCAAATAAACTCTGGGCCCCTCTTACCACCCCGCCCCCGTCTCTCTCCAGGACAGCTCGATCGaccccccaacacccccccccgGCCCGTACGCGACCACAGTCTGGACGCTGCCCCCTGGGGGTGACGCCACCCTGTGTGTCCCAAACGCTGCCTGCCATGAAATACGTGTGCGTTTCAGTGATGGATCCCAGGGTTTGGGtgtgtgaatgcattttttttaattttagtacgTGTAAATGCAACTTCGCATTCTTTGTGGGGAAAACTGTAGTTGGATGTGTAGTAAAttctttgcctttttattttaattttgttgtattttgcttctgtgcttttttttcctccactgaTGGGTAAGCCTTGCCTTGtaacattattaatgtaattggGTTTGCTCCTCTGAGTTTAAACTTGCCTGTTGCTccgttatattattattaagtgtaaTCTGAATCCTTGTGGAGTAAAACCTACTGTTATACCATTCACTCCGCTCTCCCTTGTGCTTTGTCTCTCAGATGTGTGAGTCAGTGGGCAGTGTGATGTCACAGTGCCACGGTGTGACGTTTGTTTACTG

Function

GO: NA

KEGG:

id description
K01149 TRIR; telomerase RNA component interacting RNase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62082 lncRNA upstream 76514 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 208170 2910694 ~ 2910939 (+) True G49599
TU62038 lncRNA upstream 208481 2909662 ~ 2910628 (+) True G49598
TU62010 lncRNA upstream 232971 2885831 ~ 2886138 (+) True G49582
TU61966 lncRNA upstream 306216 2812174 ~ 2812893 (+) True G49541
TU62224 lncRNA downstream 232563 3356699 ~ 3359529 (+) True G49738
TU62242 lncRNA downstream 290045 3414181 ~ 3443897 (+) True G49754
TU62240 lncRNA downstream 305761 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA downstream 319866 3444002 ~ 3445127 (+) True G49753
TU62428 lncRNA downstream 838992 3963128 ~ 3964014 (+) True G49914
AMCG00008516 mRNA upstream 16326 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008514 mRNA upstream 98043 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008510 mRNA upstream 99188 3016456 ~ 3019921 (+) True AMCG00008510
AMCG00008509 mRNA upstream 115549 2994941 ~ 3003560 (+) True AMCG00008509
AMCG00008505 mRNA upstream 212168 2904559 ~ 2906941 (+) True AMCG00008505
AMCG00008517 mRNA downstream 7744 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008523 mRNA downstream 228969 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008525 mRNA downstream 293375 3417511 ~ 3426260 (+) True AMCG00008525
AMCG00008526 mRNA downstream 305765 3429901 ~ 3431004 (+) False AMCG00008526
AMCG00008527 mRNA downstream 338267 3462403 ~ 3469127 (+) True AMCG00008527
TU62012 other upstream 230213 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 349065 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 907595 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 975799 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1013536 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 1031952 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 1037922 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1437855 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2471887 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2614405 5738541 ~ 5742750 (+) True G50243

Expression Profile