RNA id: AMCG00008524


Basic Information

Item Value
RNA id AMCG00008524
length 756
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00008524
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3345535 ~ 3346773 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCTTTGCGTTACCGCCCTGCTTTGCGCTCTTCTCTGCGCCACTGTGGACAGCTTTCCGCACAACGCGCTGGAGAGCGTCCTGGCCCGGCACAGAGCCGCCGAGGCGTCGGGCAGCGGGCCCGGCAGCGACGAGCCCGTCCGGGGGACCGTGAAGGTGGTCCAGGTCAGCCCACAGTTCCTCCAACAGTCGGGTTTTTTCCGTAGGGGGACACCGTTCAGGGTCCCCCCGCATCACAGAGGACTCTTGCCCCCATTCTTGGCGCTGGGGCGACCGGGACCTGCTGTCTCCAACTCCGGAGCTCTGCCCGGGCCACGGCCCCAGCTAGAGGGGAAGGGAGACACGGAGGCCATGAAGAGACAAGGGCTGGACATGTGGAGGAGAGCCATGGAGAAGAGCGGCGGTGCCAGGGAGGCGCTGCCCGTGCCCATTAGCCTGATGGACAGCAGCAAGCAGAGCTGCGCCGCGGTGCCCTTCACACAGCGCGTCTCGGCGCCAGGCTGCGACGCGGTCACGGTGTCCAACAGGCTGTGCGTCGGCCTGTGCCTGTCCCTGTACGTGCCCCCCGGGGCAGCCCCCTGCTCCCGCTGCGCGCCGGTGAAGACCCGGGTCGTGTCGGTGCCGCTGCGCTGCCGCGGAGCTCCGGGCCTGCGGGAGAAGCGCGTCGTCCTGGTGGAGGAGTGCAAGTGTGAGACCGGCGGCCAGGCCCCCGCACCTCAAACACCGAGGCACAAAGGGTTAAAGCTTGACTGA

Function

GO:

id name namespace
GO:0001706 endoderm formation biological_process
GO:0001707 mesoderm formation biological_process
GO:0010084 specification of animal organ axis polarity biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0003146 heart jogging biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:0001947 heart looping biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0005515 protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62058 lncRNA downstream 370382 2974949 ~ 2975153 (-) True G49614
TU62048 lncRNA downstream 434907 2909662 ~ 2910628 (-) True G49606
TU61973 lncRNA downstream 521559 2823241 ~ 2823976 (-) True G49547
TU61913 lncRNA downstream 643113 2636915 ~ 2702422 (-) True AMCG00008491
TU61850 lncRNA downstream 908778 2377005 ~ 2436757 (-) True G49462
TU62306 lncRNA upstream 26771 3373544 ~ 3379324 (-) True G49802
TU62310 lncRNA upstream 43430 3390203 ~ 3392090 (-) True G49806
TU62317 lncRNA upstream 67408 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA upstream 79009 3425782 ~ 3437347 (-) True G49810
TU62322 lncRNA upstream 84041 3430814 ~ 3863106 (-) True AMCG00008554
AMCG00008522 mRNA downstream 109969 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008521 mRNA downstream 172564 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008518 mRNA downstream 214476 3128983 ~ 3131059 (-) True AMCG00008518
AMCG00008520 mRNA downstream 223536 3116825 ~ 3121999 (-) True AMCG00008520
AMCG00008519 mRNA downstream 233851 3104606 ~ 3111684 (-) True AMCG00008519
AMCG00008528 mRNA upstream 9941 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008530 mRNA upstream 155989 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008531 mRNA upstream 174696 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008532 mRNA upstream 207766 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008536 mRNA upstream 253995 3600768 ~ 3611264 (-) True AMCG00008536
TU62046 other downstream 436870 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1260529 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1464573 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1495253 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2404883 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 427810 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2402117 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2440977 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3601116 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3798852 7145625 ~ 7151472 (-) True G50476

Expression Profile