RNA id: AMCG00008525


Basic Information

Item Value
RNA id AMCG00008525
length 1365
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00008525
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3417511 ~ 3426260 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttacattatattgcatgtctacatatttttataatatattgcacaATATTTCATTTCTGTATGGGGCAAAACAATATCTGCTGTTTGGTGTACAAAGTGCCAACCTTAGGCAAGTGTTCCCTGGCCAATTTACCATAGGATCTGTGCACTGTGAACATGTTTTACTGTGGTACTGCCCAAATGTTACaatgtgttattgtgttttttacgTGCACTCACAGTACTTTAATACACACTGTTTCAATACAGCCCAGTTTACCAGAGGAAGCATGCCATACGAATAGCGATCAAGGTAAATCATGGTATTCTCAAATTCCTTTGTGGTAAACTGTTGAACCCAAAGGAAATCAGAATTGCAGGTGCAGTTAACTGCAAAGAAGGAAAATGGGACTTTGGGTCTGGTTAACCTTTCTTTAGATTGAAATGTGTGGTGAAGGAATTCGTTTATAACAGCTGTTTCAAGccaaacatttatttctaagcATCTGTGACGAGTAATTGTTTTGACTGTGATTGTTGAGGACTGTGAGCCTAGACTTGATTGGCGCTACAATGTATATCTGAAACAACATTTCGTTTTCTTAAccaatgtgtatatttttgaagCAACATTTCGGAACcgatgtatatgtatattcaaAACGCAAAAGTGTTATATACATTTCTGGCACTAATAGGCTTCCGTCATGATCCTTTCAACTGTGCGCACAAGCCTCTCCATCCTGATCACACGGCGCCCTCGGCTGTGGCGCAGTCGCAGACGCGCAGGTGTAGCAATGCCCTTCCCAGCATGCCCTGCTCAGAGCCTCGTCCTGGCGCCGCGCGTTCAGGGGCGTCATTTGGCCGGACTGCGCAGCTGTGAAGATGCAGCGCGACCAGCGCACCGCCGAGCAGATCGCCGAGCTGCGGAGGAGGATCCGGATAATCGAGAGGGAAAGCAGTGCTTACTATGAGGACACTCAGCGTACCATCCAGAAGAACAAGGAAACGATTCTGCAGCTCCGGCAGCAGAACGAGAAGTTGCAGAAGAAGCTGGCGGACTCTTTAGCGAGAGACGAACGGGTGGTAAAGGATGCTTTTCAGGACAACAGAGTGGAGGGAGCTGCCATGAGGAACAAGACTGGGATGGCCGCTGTGCAGATCGTGGAGCAGAAGACGTGTGACACGATGAAGAAGCTCAACGCCCTGAGGCACCAAAAAAAGATTCGCCAGTGCTACCTGAAGAAGCTGCAGGCTCAGATGCTGGAGAACCGGCTGGAGAAGGCTCAGCTCAAGTGCCAGGCAGCCGAGCATATAACGCAGGTGTACCTGGAACTGAAGGCCCACCTCCAGGCTGTGACGGTCAACAGTGGGCACCAGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62224 lncRNA upstream 57982 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 374916 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 506572 2910694 ~ 2910939 (+) True G49599
TU62038 lncRNA upstream 506883 2909662 ~ 2910628 (+) True G49598
TU62010 lncRNA upstream 531373 2885831 ~ 2886138 (+) True G49582
TU62240 lncRNA downstream 3637 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA downstream 17742 3444002 ~ 3445127 (+) True G49753
TU62428 lncRNA downstream 536868 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 598841 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 608489 4034749 ~ 4035052 (+) True G49944
AMCG00008523 mRNA upstream 62116 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008517 mRNA upstream 280179 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008515 mRNA upstream 293375 3119109 ~ 3124136 (+) True AMCG00008515
AMCG00008516 mRNA upstream 314728 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008514 mRNA upstream 396445 3020595 ~ 3021066 (+) True AMCG00008514
AMCG00008526 mRNA downstream 3641 3429901 ~ 3431004 (+) False AMCG00008526
AMCG00008527 mRNA downstream 36143 3462403 ~ 3469127 (+) True AMCG00008527
AMCG00008529 mRNA downstream 141299 3567559 ~ 3581461 (+) True AMCG00008529
AMCG00008534 mRNA downstream 156861 3583121 ~ 3592683 (+) True AMCG00008534
AMCG00008533 mRNA downstream 246441 3672701 ~ 3673436 (+) True AMCG00008533
TU62012 other upstream 528615 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 647467 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1205997 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1274201 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1311938 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 729828 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 735798 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1135731 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2169763 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2312281 5738541 ~ 5742750 (+) True G50243

Expression Profile