RNA id: TU62240


Basic Information

Item Value
RNA id TU62240
length 2004
lncRNA type read_through
GC content 0.40
exon number 4
gene id AMCG00008526
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3429897 ~ 3885604 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acagCCTAAGAGCTACGTCCCGGACGCCCCCGTACCCCCGTCCTCGGAGGAGGATGTGCATGAGCTCCTCTCCCAGGCAGTGCAGAAAGTGCTGCTGATGATAGAGGAGCTGAAGGGCAGAGACCTCGGTGATCACCAGAAGAAGAAGAGGACAGTGGCGAGGATGACCCGGAAGTACTGAAGCGCGACATGCTGGAGCGCCAGTCCCAGCGCATCGTCGCCTACCACACCAAGGGGAAGGAGAAGAGGAGCAAGAAGAAGAAGGCAATTAGTAGCCCTACAGTATTTATCAGTTCTTGATTCCTAATTGGGTTCTTCCACTCCCACTCTCCTCCAGTTTATAATCTGGCACCACAGTTGATTTATGTTGACTTTCACAGCCTTCTAGGGTAAAATGGGCTGGATTTAGTTGAGTTTCTACCCCCGCATCATGTTCGCTATTGCGTACTTGATAACAAATGTACGAATAATGAACAattttttggtaacactttgcaataaaatgttagttaggattaacaaacatctaaatatgtcATCCTTGAAATGTGTcctgtttattcatgttaaccAAGTCATTTGCTCATGTTAGTTACTGCCTCTGAATATTCAGACgaagaaagacaaaccaattaatgaattcatgcagtaagaacataagaacataagaaagtttacaaacgagaggaggccattcgacccatcgtgctcgtttggtgtccattaataactgagtgatccaaggatcccatccagtctatttttaaatgttcccaaactttcagcttctaccacatcgctggggagtttgttcagattgtgatgcctctctgtgtaaagaagtgtctcctgttttatgtttttaatgccttgaagcccaatttccatttgtgtccctgggtgcgtgtgtctggaatctggaaaagctcctctgcttTGATGTGGTTGTTGcccatgattttgaagacttggatcaagtccccatgtagtctcctctgttccagggtgaaaaggttcaggtcctcagtctctcagtaggacattcccttcagacctggaaaaagtctggttgctctcctctgaactgcctctagacatttgaatttcatctgcattgaatttaattttgtgcTGCTATGTCAGCCCACACTAGGTTAACCAGTTTACAAACCTATCCTCACATCTCAGAACAAATTCCTGACTATATAGAACAATGGAACACTAGAAGCAGCACAGGTTCACTCACACCTAGAAGTGTCACACcagtttaaattactttattcaTGTATCATAATGAAAGACGAATAAccattatatatttactttttattacaatgtataatTGAACATCACTGTAATTTTaaccatttttaatatttttaacatttgttctTCAGTACAAAATTAGAACAAATAAGAAAacgtttaataaaaaataaatcattcaaggaattttacaaaaaactgaacaatcCACGGCTGAAACCCTCCCTTGTCAAGGCTCTGTCTTATTGTCATTTGCACGTCTCTCTCTTGCAAGTGCAGAAAATTATAGATGAAATGAGTGGTAAACTCAAGTGGATGAGGAGAGTAGAAAAATAGccggcaaaataaaatattgattatgtAAAGAAGCTGTGCATTGTGAAAAGAATTTGATTTCTACAATATCTGTACTGAAGACGGGGAATGTTTTGGACTGTTTCTGTAACTGGAATTGCCACCAATGATCTGTGGATAATCTGAGGGTTCTGCTGTATAAAGTGTTGGGGAAGATAGTGTCCGACACTTGACTTTTCTGTACAGATTTAACTGTCGACGATGCTCgactttcaaacctggaaaaggGCGCTATAAAAAAGACGGGTGCTATGATCACGGATGCAAAGAACAATGTGAGACCTTTTCAGCATTATCTATACAATGGTTTTATTGTTGATGTTTAATgaactgttgtttatttttaaaatggctcatatcattgttttattcatgtatgtaacC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62224 lncRNA upstream 70368 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 387302 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 518958 2910694 ~ 2910939 (+) True G49599
TU62038 lncRNA upstream 519269 2909662 ~ 2910628 (+) True G49598
TU62010 lncRNA upstream 543759 2885831 ~ 2886138 (+) True G49582
TU62428 lncRNA downstream 77524 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 139497 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 149145 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 422222 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 576758 4462362 ~ 4468763 (+) True G50055
AMCG00008525 mRNA upstream 3637 3417511 ~ 3426260 (+) True AMCG00008525
AMCG00008523 mRNA upstream 74502 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008517 mRNA upstream 292565 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008515 mRNA upstream 305761 3119109 ~ 3124136 (+) True AMCG00008515
AMCG00008516 mRNA upstream 327114 3087180 ~ 3102783 (+) True AMCG00008516
AMCG00008556 mRNA downstream 48398 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008555 mRNA downstream 71937 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008560 mRNA downstream 123594 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008559 mRNA downstream 136921 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008569 mRNA downstream 212192 4097796 ~ 4098156 (+) True AMCG00008569
TU62012 other upstream 541001 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 659853 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1218383 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1286587 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1324324 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 270484 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 276454 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 676387 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1710419 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1852937 5738541 ~ 5742750 (+) True G50243

Expression Profile