RNA id: AMCG00008527


Basic Information

Item Value
RNA id AMCG00008527
length 2082
RNA type mRNA
GC content 0.62
exon number 17
gene id AMCG00008527
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3462403 ~ 3469127 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATTCCTCTTACGCAGaACCCTGTGCAGGAGTGGGgtgaggaggtggaggagggcgCAGTGTATGGCGTCACCCTGCGCAGGGAGCCCGTGCAGCCGCCCGAAGAGGGGGAGGCCCAGTCGTGCTTCAACTTCATCCAGTACCGGACCACCAAGGTGCGGCGGCTCAAGGGGGCAACGCTGGACAGACTGGTCACCGAGCTGCTGGAGCCCGGCGACGACGCCGACTTCGCAAAGATCTTCCTCTCCACCTACCGCGCGTTCACGGACACCAACACCTTCACCGAGCTGCTGTTCCACAGGGATGACACCACTGTTGACTTTGATGACAACATCTGCCAGATCTACCCAAAGAAGAGCAATCTGATCCCTGTGATCCAGACCTGGCTGGAGGAATACAGCAATGATTTCCGCGACCCCCCCCACTACCCCTGCCTGAAGCTGCTGCGCGTGCGTCTTCGCAAACGCCTCTGCTTTCGCCGGCTGTGCCAACGCGTCGAGGCCCTGCTGAAGAAGTTCCGTGGCGAAGAGACCACCAAGAAACACCAGGCCACCGTGGGCCGTCCGGAAGCCGAGTGGGACGGCAACGAGGAGGTACGCGACTTCCTGGACTTCCCCCCCGGGGACGTGGCCGAGCAGCTCACCCGATTGGACGCGGAGCTGTTCGTGAAGGTGCTGCCCTTCCAGTGCATGGGCTGCGTCTGGTCCCAGCGCGACAAGAAGGAGAACAAGCACCTGGCACCCACCATCCGCGCCACCATTGCCCAGTTCAACCGAGTCACCAACTGCGTCATGGGCACCCTGCTGTGCCAGGGGGGCGCCCCGCGGCCCTGCGACCGCGCCCAGCTCATCGAGAAGTGGATCAATGTGGCCCAGGAGTGCAGGCAGCTGAAGAACTTCTCCTCCCTGCGGGCCATCCTGTCGGCTCTCCAGTCCAACGCCGTCTACCGGCTGAAGAGGACCTGGGCCGCTGTCTGCAGGGACAGCATCACGGTTTTCGACAATCTGTGTGAAACCTTCCCCGACGAGAACTGCATCCCCAGCTGCCGAGAGATCGTTGAGGATGGGAGGAACTCCCCGAGCGAGGACGAGTCTCCCCAGTCCCCTAAACGCTCCACTGCATCCCCACAGACGAGCTCCAGCAGTGTCAACGTGCCGTACCTGGGTACCTACCTGACAGTGCTGACCATGCTGGACACCGCACTCCCAGACACTCTAGAGGGTGGGCTGATCAACTTCGAGAAGAGAAGGAGGGAATTCGAGATCTTGTCCCAGATCCGACAGCTCCAGTCTGCCTGCTCCAGATACAGCCTCAGCCATCACCCCCGGATCGCGGACTGGCTGAAGAGTCACAGGCTGCTGAGCGACCAGGAGAGCTATGACCTCTCCTGTGAGCTGGAGCCCCCTGTGGACACCTGCCCTGGCTCCCCCAGCTCATGGAGTCGCCGTCTGATGGCCAAGAAGGTGACCTCGCGGCTCACGGTGAGCGAGGGATGTGGGAAGACGAACCCGGACCAGATCAGCGTTTCCTCCTCGGGGTCCAGTGGATCTGATATGGAAGATctctcctcgtcctcctcctcgtcctacTCCCCCTGCAGAGCCAAATGCAAGATGCTGTCCAGCTCCTGCCACGACGTGGCCGAGGAGATCTTCGTCCCAGCCAGCTCGTCCAGCTCCTCCTGCTCCGGCTCCTCCGGCTCCAACTCCCAGCCCGACCTGTCGGCCGTGCCGCGCCACCTGCAGCACAAGCGGTCCGTATCCATGAACTCGCTGCCCATGTACAACCGACAGGTGGAGGACTGCTGCGTGATCCGCCTGACCAGCCAGGACAAGACGGCCCAGGTGATCCAGAGAGCGCTGGAGAAACACAACTTGGAAAGCAGCGGCTGCCAGCACTTCTCGCTCAGCCAGGTCATCTCCCAGGACCGAGAGCTGCTGATCCCGGACAAGGCCAACGTCTTCTACGCCATGTGCACCACGGCCAACTACGACTTCATCCTGCGGCAGCACTGGCGTGGGCACGGGACTCCACAGGGCTCCTCCACCAGCCCAGCCTCACAAGGCCGTCCGGGCAAGTGA

Function

GO:

id name namespace
GO:0065007 biological regulation biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 17276 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 18506 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 102874 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 419808 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 551464 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 494001 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 555974 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 565622 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 838699 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 993235 4462362 ~ 4468763 (+) True G50055
AMCG00008526 mRNA upstream 31399 3429901 ~ 3431004 (+) False AMCG00008526
AMCG00008525 mRNA upstream 36143 3417511 ~ 3426260 (+) True AMCG00008525
AMCG00008523 mRNA upstream 107008 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008517 mRNA upstream 325071 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008515 mRNA upstream 338267 3119109 ~ 3124136 (+) True AMCG00008515
AMCG00008529 mRNA downstream 98432 3567559 ~ 3581461 (+) True AMCG00008529
AMCG00008534 mRNA downstream 113994 3583121 ~ 3592683 (+) True AMCG00008534
AMCG00008533 mRNA downstream 203574 3672701 ~ 3673436 (+) True AMCG00008533
AMCG00008540 mRNA downstream 215386 3684513 ~ 3688173 (+) True AMCG00008540
AMCG00008542 mRNA downstream 265741 3734868 ~ 3735113 (+) True AMCG00008542
TU62012 other upstream 573507 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 692359 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1250889 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1319093 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1356830 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 686961 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 692931 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 1092864 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2126896 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2269414 5738541 ~ 5742750 (+) True G50243

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU145872 True 649 lncRNA 0.55 2 NC_035909.1 1214005 ~ 1221353 (-)