RNA id: AMCG00008529


Basic Information

Item Value
RNA id AMCG00008529
length 3237
RNA type mRNA
GC content 0.68
exon number 21
gene id AMCG00008529
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3567559 ~ 3581461 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCCGGTGGCGTCCCGGCCTCTGCCCCCGCGGCCCAGTTCGGTGGGGGCGGCGCGGGAGGTGAATGCGTTGTGGCGGTACCTGCAGGACAGCGGGCTGCAGCGCTGCGTGGAGGAGCTGTGTGCGGAGACGCTGCGCCACCCGAACCCCCCCGCCAACCCCTACCCTGGCTTCTCCCAGCGGGCAGGACAGCTAGCAGAGAGgCTCAGGCTGGCGGAGTCGGCCAGTGAGGAGACCTTCCAGATTCACCTCGCTTTCCCAACATCCTCCACTGCTGTCCGGTATATCGCAGGTGCGAAGGGCTGTTCCGGGCTCTGGGGCCTTCCCAGCGTCCTGCACTGTGTCGACCCGCAGCAGATCGAGCGATTCCGCTGGCTGATTGAGGACGTGACCCCTCCGCTCGCCAGCCTGAGTTGCAGCAGCCCGTACTCGATCCAAGTGCTGGCCGCTCTCACAGGCCCCTGCGTTTTCATGGGGACCCTCTTCCCCTGCCCCCCGTCCCTGGACCTCCTCCAGATCTACGTCATCGCCGGGCCAGACCCCGAGCGGGCGCGCACCCTCTACGCACAGTGCGTCCGCCGTGATGTCATCAGGATGAGCCAGCAGGGCCGCCACCGCCTGCTAAGaaTACTTGTTCCAACCAACAACAAAGGAGAAAATAAGTCATTTTCAAAGGAGGAAGTGTCGTCCCGAGGGCCGGAGTTTGAGGGTGCGGTGCTGAGCTCTCTGGACGACCGTCTCCCGGTGCGAGCGGAGTGCGTGTGGAGAGTGGACCCCCAGGGCACATGGCACCAGGGGGGGAGCAAACTCTACACCCTGACTGCCATCCAGACCGCAGGGCGTCACGAGGAGGAGAGGGTGCTGGATTTCTCCGAGAGCCCCCTGACGCACCTCGCCAGCAGCGTGTTCCCCTGCCAGGCCCAGGCCGAGGCCTACGCCCGCATCTTCCTGCCCAGAGAGCCGCCCAGCCCGGACCCCAGCTCAGGGGGAGCTGCGGAGGCCGGGATTCTGGCTCCGGTGCGGGACGTCCTGCTCCGGAAGCTTGACGCCCTGCAACTGCCCCGGGATGCCCTCCCCGCCGCCCACCTCTgcgtcctgctgctgctgctgccgccgccaGACACGGCCGGGGAGGCAAGAGCCCAGGGGCACGAGGCTGTGGCCCAGCTGTACCGGTTCTTGCGGGGCGGCGCCGGACGGCTGTGGGCGCTGCAGGAATACGCTCTCACCCTCTGCAGAGTCCTGGAGTCCCAGGCCGGCAAGGCTGGGGACGTGCAGCTGTGTGGCGCTCTGGCACAGACGCTCAGGGGGCTGATGGAGGGGTTTCTGACCCAGGTTGGCAGGGTCAGCTTCTCCAGTGACGCCCTCTTCCTCACCGAGAACCTGAGCAGCCGCCTGCAGTCCTGGTGCGGGTACAGCTGTGTGCTGCAGTGCCAGCTGCTGTCCAACTCTCTTCCCTGGGTGCCGGTCCTCTCCGAGCTGAAGCAGACGGCCGACCGAGCTGCCGGGCCGCAGCCAGGGAATGGGCGGCCACAGAGCCCCCCAGAGTCCGTAGAGAGGTGCTCAGTGTACACCCAGGAGCTGCTGTACCACGCCGAGCGCCGAGCCGACCTGTCCCGAGGGGGAGGAGCTGCGGACATGGGCGGCCTGGAGCTGCAGGCCCAGCTCTCTCAGTACCTGATCGACTGTGCCGTGGACCAGTGCTGGCAGCGGTGTCTGTGGACGGTGCTGTCCTCCTCCCCGCCACCTGCCAACCCGTACCCCGCGGTCGTGGAGGAGTTCAGGAGAGCCGCACTCAGGCTGGCTCTGTGGCGCAGCTCTGACGCCCAGCTCCTGAAGCAGGTGCTGCCGGGCTCCTCTCGTCCCTCAGACGGGGGGCTCTGGCTGCACTGCGGCCCAGGGGGAGAGGGGCACGGCCTGGAGAGCGCCATGCGAGCCGCCGACCCCGTCCAACTTCCCGCCACCCTGCGCCGGGCCCTGCCACTGCGCTGCCAAGACCGCCCCACCGCCGGGAGCTTCCAGGTGGCGACCGGCCTGGCGGTGCTGTCTCCGGCCACATGGCTGGGATCCCTCAGCCCCTTCCTGCGCTCCCTGGAGGCCGTGGAGAGGGGGGGGGCCCTGACTGCGTACACCGTGCACCTGGGCCGGGGGGAGGCGTGGGGGGAGCGTCGCATTGCAGAATTCCCCTCCGCCTTCTCGGAGCGCCTGATCGAGGACCTGCAGGAGGGGCGGCCCGTCTGCCTCAAGGCCTTCCAGCCCCCCGGGCCGTCGGAGTGGCGCTTCCTGCCCCTGGTCAAGCGCTTTGTCCTGTACTATCTCCAGCAAGGGGGCGCCGGCTGGCTCTGCTTCCCCAGGCACGACCCGCTGACCGTCCACCGGGCTGTCTTCCTGTCCCGAGAGCAGGCCGCCTTCCACCTGCGCTGCGTGGGGCCAGCTGGAGATCCTTTCAGCTGCGCCAACCTGCAGGAAGTCATGTCGGCCCTAGATCCCCAGATCACCGGCTGCTTCCTGAGAGGAGAGTGGCAGCCCATGTACAGGCTGCTGGCCCTGCGCGCCCTGATCACCGCAGAGGATGCCCTGCTGCCGGCCTGCTGGAGGATGGCACACAGCGCGGGCGCCCAGCTGGAATATCTCCAGAGCGCCGCCCGGACCCTGCAGGAGCTGTCTGAACTGTCCGGCAGTGGGCAGACCCTCTCAGAGCACCATGCGGCTGTAGACGTCATGCTGCGGGGCTTTATCTGGACCCTGCGGAGGACTCTGGAGCACCCTGACTCTCTGGCCCCCCCGGCGCTGTGGGAGGTGGTCCGGCCGGGCCCGGGGCTGGTGTGCGGCGGGGGGGGTCCGGCCTGGCTGCGGGCTGCAGCCGCAGTGTGCGGGGCCCTGTCGGACAGCCTGGCCCGGGACCTGCACTCCCTGTGCCCCGCGGTCCGGGCCCTGCTGGACAGGCTGCTGGACGCACAGAGCCGGAGGGCCGTGAGAGCGCAGGAACACTCCCCCCGAGCGGCCCGGCCCGGCACACTCCCACCCCCCCCGCCTGCGCCGCCGGGTCCAGCGCACCGCAGCCCCGCGCACCGAACCCCCGCGCAGGCCCTGGACTCCTACTAGCCCTGCGGCGGCCCGATCTGGGCAGAAGGAGCTCTAGGGATATAAACGAGCCCCCCAGTCATATTAAAGACAATCATTTTTTACAATCATATTTCTTGTCACGACTGAAAATACATCTTTGCTTCTGAG

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 122432 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 123662 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 208030 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 524964 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 656620 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 381667 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 443640 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 453288 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 726365 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 880901 4462362 ~ 4468763 (+) True G50055
AMCG00008527 mRNA upstream 98432 3462403 ~ 3469127 (+) True AMCG00008527
AMCG00008526 mRNA upstream 136555 3429901 ~ 3431004 (+) False AMCG00008526
AMCG00008525 mRNA upstream 141299 3417511 ~ 3426260 (+) True AMCG00008525
AMCG00008523 mRNA upstream 212164 3353105 ~ 3355395 (+) True AMCG00008523
AMCG00008517 mRNA upstream 430227 3131880 ~ 3137332 (+) True AMCG00008517
AMCG00008534 mRNA downstream 1660 3583121 ~ 3592683 (+) True AMCG00008534
AMCG00008533 mRNA downstream 91240 3672701 ~ 3673436 (+) True AMCG00008533
AMCG00008540 mRNA downstream 103052 3684513 ~ 3688173 (+) True AMCG00008540
AMCG00008542 mRNA downstream 153407 3734868 ~ 3735113 (+) True AMCG00008542
AMCG00008544 mRNA downstream 156285 3737746 ~ 3738114 (+) True AMCG00008544
TU62012 other upstream 678663 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 797515 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1356045 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1424249 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1461986 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 574627 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 580597 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 980530 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 2014562 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 2157080 5738541 ~ 5742750 (+) True G50243

Expression Profile