RNA id: AMCG00008531


Basic Information

Item Value
RNA id AMCG00008531
length 3402
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00008531
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3521469 ~ 3528475 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCCCGGCCCCCCGGCCGACGCGCTGCCGTCCACTCCCCTCCTGCTTTCCCTTCTTCCCCTCCGCGGCGAGAGGCGGGCCCGCTGGGCGGTCCTTAGCCGGGCCCACTCGCCAGGGCCCCGGGGTTCATCCGAGGTGAGGCGGCGTCCTCGCCTGAACTTTCCAGggagagaaacaaatacagGCTGCGCCATTGAGAGCCCAGCAGAGGCAAACGAGCAGAGCTGGGAGGAAGAGCGGAGCCCGAGTCGGAGCTGCTGGCGGGGATCTGTGGCAAAGATCTCTATAACAGGCGATCGCAGAACCGAAACCAAACAGCACTGGTGCTGCTGGACCCGACACTGGACCCGACACTCTGGAATTAAGCCGAGGTTCTATTTCTGCGCAGGTGGGGCTGCTGCTGCACTCAGAGGCGGAGAAGTGAACACAgcaggagaaacaaaaactccAAGAGCCCCATCGAGTCTGATGAGCCTGGACGAGGAAGCTGCTGATCGCTTTCACGGCATGAGCGAGCAGAGCGGCCCAGGAGGCAACCACAGCTCCCCGGCCACCGAgttcctgcaggagctgctgcCCTCCCCCACTGGGGCGACCCTGGAGGTGCAGACGGGGGGCATCTCCTTCACGGACGAGGCCGTGTCCATCCTGACCACCAACAGCATCCTGGCCCGCTCCCTGCTGGGACGTGGGCAGCTGAAGCGCAAGGACAGCGCCAGCCTGCGCCGGAAGCGCGAGTTCATCCCAGACGAGAAGAAGGACGACGGCTACTGGGACAAGCGCAAGAAGAATAACGAGGCGGCCAAGCGCTCGCGGGAGAAGCGCCGGGTCAACGACATGGTGCTGGAGAACCGCGTCATCGCGCTCCTGGAGGAGAATGCCCGACTCAAGGCCGAGCTGCTGGCCCTCAAGTTCCGCTTCGGCCTGATCAAGGACCCGTCCGAGACCACCATCCTGCCCATCGCAGCCTCCATCCAGCCGCCGCCCACCCCTGCACCCTCCGCCCGCTTCCACACCGCCATGCCGGCGCACTCGGGATACCTGCCGCGGACGGAGGGCTCCTACCCCGGACACAGCGCCCCCGCCGGCCAGGCCTACATGCAGGGTTACGGCGGCCGCGGCGCCAACCGGGAGACACCCAGCTTCTCCGAGGACTCGGGCTTCTCCACCCCGGGCAGCTCCAGCGTGGGCAGCCCGGTGTTCTTCGACGACCGCCTCAGCGAGCACGGGAAGTTCTCCCCCCAGGGCGCGGAGGAGCCCGGGTACGAGGTGCACCCCTGCCCCGTGGGTGGAGAGGCCGAGGCCGAGGCGGGACAGTACCCTGCGGAGGCCGTGCGCGTGGGGAGGTACGACCTGGGGGAGGGAATGAAGAGCCTGCCCCACAAACTGCGCTTCAAGACGCCCAGCGGGCCCGAGTGCGGGGAGGTGTCCGCCGACGTCCGCCGCAGCCCCGCCCAGCCCGTCGGTGGCCGAGAACTGACGCGGGAGCCGATGAGGGGCTCCTACCTCCTGGGGAACAGCCAATCGGAACACGCTGGCGGCTGTGGGGTCCAGCCTGCTTGGCAACACGGCCCGGGCGAGGAATCCAAGAGCGGGCGCGCGAGGGAGGAGCAGCAGTACTGTGCCCAGCCAGGCGGGTACCCCTCTGCCAGCCCGCAGGACAGCGTCTACCATGTGGAGAATACCGCCCTCAAATCGCAGCTCAGCTCCCTGACAGAGGAAGTGGCCCAGCTGAAGAAACTCTTCTCCCAGCAGCTGCTCTCCAAAATGAACTAAGAAAGAGACGGTCGTACGAGTTGAGGACAGTCACTCATTCTCCGTGTGAGCCATTCGACGCTGAAAGTGCAGGACTGCTGTACCCCACCGCTGCCCCCATCTGCCGCCCCCATCTGCCACCCCCGCACTGGCACCGAGTGGGGTTGTCACACGAAAACAGACCCTCTCTGGGTCCAGGGACACTAACTCAAGTGCTGGTTCACAAGTTTGGGAAAAGAGCATGTGAAGATGAGATGCACCTAGAACACCCCCCCCCCGGAAGGCGTTCGCACCCTTTGTGTTGTGCTGGTGTCGTCTTTTGTGATGTTCTTTTGTTGAAAATCTTGTTGCAGAACTATAAAACGAAGGTCCAATCTGGCTGAAGACACAAAGGCGAACTCTCGATTAAAAACATATagaatttatatttcaattaaaaattaagatatatattttagtgttaGCTCACTATGATGGCACACAGGAGTAAATGTCGTTGGTGAATTTCATCAGGTGACTGTTGAGTTATAAAtcgtttttttccccacttagttttttttctttcactttccaGAATTTAAGGGTGCAGGTCCGGGAGGTGGGAATTTAAGGGGGTCCTAGACTATGAGACACAATGAGGCAcgctttaaaaataacattttaaaaagccttcGGATATTTGGTGCCAAATGCAGTAGAATCATCCAGAACCGCAAATCTTCAAAAGGTTACAACAATCACAATTAAAGCGGACAGTATTTTTCCATACAAATTCTACATATTACAGACATTATAGCATTGCTTAGGGACTCGGAGGGCTTAATTGAAAGGCcatatcaaatgcatttaattctcATATCAAAACGGGGATACTTCTGTACCAGTGATGCATCCCCACTTCAAACCCAGTCCCAGCTGTCACCTGCAAACGCTCACACCCATGAGCCCACCTCTCCCTCGATACAGTGACCCCGTCCAAGAGCGTCTGAAATGAACTTATTTGGGAACCTGACCCCCTCCATCCCCGACACACAAAGGGAGGTTTCCCTCATTCCTGCGATTTCCTATGCCTGGCCACTCACTGTGGCAGCTGCACAACCACACttgacattaacacacacacacaaccgaGGACCTCGGGGGCCCGGCTGAGATTCACAATCGCCGCAGAGCAGGGGAGTGAGTCTGTGCCACGGCAGCACGGCACCCATCGGCACAAACACAATCCGCCGAGGAGGTGAGATGCCATGGCTGGACCCTCGGCCGTCCCGTCCCAGGCATTTGCAGAAGCAGTGTTAGACACGACTGTACCCAGAACAGCGAGAACAAACCGACGACCGCACGACGCTGCGGTCTGTAAATAAGTCGACACTTATACAGCTCACTACACAACCCTTGTGATGCCGTTCACACTATTCCAAATCCGTGTCACACAATGTTGGTGTATTGGACTGTAAATATCACTAGGtacagtgtgtatttattgtatataatatatatatatatatatcttttgtttcctttcccttatatatcttttttttaaacatgtaaataaacttttttgACGGTTCACTGGTGTCTGCAGTTTATTGGAAGTTGGGGGGGGACTTTTATGTAACTGGTAAATCACTGAATCGGTCG

Function

GO: NA

KEGG:

id description
K12114 VRI; vrille

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62317 lncRNA downstream 77560 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA downstream 84122 3425782 ~ 3437347 (-) True G49810
TU62310 lncRNA downstream 129379 3390203 ~ 3392090 (-) True G49806
TU62306 lncRNA downstream 142145 3373544 ~ 3379324 (-) True G49802
TU62058 lncRNA downstream 546316 2974949 ~ 2975153 (-) True G49614
TU62366 lncRNA upstream 162905 3691380 ~ 3693261 (-) True G49858
TU62368 lncRNA upstream 192494 3720969 ~ 3735477 (-) True G49860
TU62373 lncRNA upstream 194754 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA upstream 251300 3779775 ~ 3781104 (-) True G49871
TU62533 lncRNA upstream 633700 4162175 ~ 4163650 (-) True G49984
AMCG00008530 mRNA downstream 17055 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008528 mRNA downstream 150856 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008524 mRNA downstream 174696 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008522 mRNA downstream 285903 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008521 mRNA downstream 348498 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008532 mRNA upstream 26064 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008536 mRNA upstream 72293 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008535 mRNA upstream 90174 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008547 mRNA upstream 241209 3769684 ~ 3777037 (-) False AMCG00008547
AMCG00008553 mRNA upstream 291540 3820015 ~ 3822415 (-) True AMCG00008553
TU62046 other downstream 612804 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1436463 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1640507 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1671187 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2580817 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 246108 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2220415 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2259275 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3419414 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3617150 7145625 ~ 7151472 (-) True G50476

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051110 True 2478 mRNA 0.42 2 NC_007114.7 14099693 ~ 14103551 (-)