RNA id: AMCG00008536


Basic Information

Item Value
RNA id AMCG00008536
length 2454
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00008536
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3600768 ~ 3611264 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAACAGATCCGAGAAGCCCCCACAGTTCCGAGTCCGAGGCCTGGGAGATCTCCGGCCCGCCGACCGACGCAGACACGGACCCCACGGACGACCCCGCTGTGGTCAGCGAAGCACCCAGGGCCGAGCAGGAGGAGGCCTGGCCTGATTTGCCCGAGCCAGAGTGGCCGGCTGAGGGGGCCGCCCTCCTGAGCCCAGACCAAGCGGAGGAGGGTCCGCACCTCCGGAATGTGGATACCGCTGAGGGCACATCAttcctgcctgcctgcctggcaGCTGTCAGTCTGGCTGGGCCACCGGAGGGAGCTGCCCGGTCACAGGTGCTCTGTGACACCCTGCAACATAGTGGGGCCGGGGAGGGAGAGTCTAGGGGCACAGCCGTCCCCTACTCCACCAACACTGTGGCAGGGGAAAACCGGGACCTTTTCGACTGCCAGGAGTGGCCACCCACCCCTCTGGACCTAGACCCGGAGGAAGGGGCGCCCGAGGAAAGGAGGGAAGGAGGTGATGCGAACGAATCCCACGCTAACGAGAGGCTTTCCAAGCAGCCACCTGTCCTGCAGCCTGCACTGGAGACGGACATGGCAGGAGAGGCAGACACCCAGCTGCGCGAGACCCTGGGGGCTGCGGCCGTAGCAGGGGCCGGTGAGAGTGTTGACAGTCAGCCTCTGGACTTCGGCAACGCCAGGGAGCAGTGGAAGATGCTGGAAAGCAGCAGCAGTGGAAGCAAGGCCCCCCAGCCTTCCTTCCCCAGCAGCTCCTTGAGGAACCAGTTCCAGGAAACACCCTTGTCCCCCTCCAGCTGCCGGAGAGATCTCCCGGAGGGTGCAGTCACAGGCGCGGTGCACCAGGGGGAGCTCCGGCACCACCTGGTCGCCCAGCTCCAGGGGCAGAAGCAACCGGTGCGGCAGCGCCCGCCCCTAGCAACAGTTGCCTGGGAGCCGGCCAATGCGGGGCCCGGCTCAGAGAGTCCTGCTGTAGTCAGGGAGCTCAGCAGGGAGGCGGGGGGGGAGGGGCCTCCAGGAGGTAGACTAACAGGTGGAGAGCAGCAGGAAACAGCTTGCACGGGCGAGGCAGCGAGAGAGACGCACCGGGGATCCCACAGCAGCGCACACGGCAAGGCGCCAGTTCACACAGAGGACACTGCGGCCGGCCAGAGAGGGACAATGGAGCTGGACAACGGGGATGACAATCTCAGCGACAGCGGGGTGTCTGCCGACTTCTCCCCCGGCAGCACCCTGGAGTTCAACTCCTCTCCCCCTGCAGAGCCGCCCCCGGCCAACGAGACGCCCATCGAGAGGGAGATCCGGCTGGCCATGGAGAGGGAGGATAACCTGCGCCGGGCTCGGGGCATCTCCCGGCGCAGCGTGAGCGAGGAGTACGTGGACATCCCCCTGAGGAAGCCCATCCTGTCCCAGAGCCTGCCCTCCAAGTCGCTCAAAGGCAAAGACCGGCACTTTGCTGGCAAAAAGATGCAAAAGGAGATCAGCATGGACACCAAGCGGGAGGAGGACCTGGTGCAGCTGGGCACAGTGCCGGGTGACTACGACAAGGGCACCATCCGCCACCTGCGTGACAAGAAGCGACTCTTTGAGTTGTTCCAGGAGAGCCAGGAACCAGCCATACCGCCCAGTAAGACCACTGACGACACCGGGCTGGGCGGATCGCCCCGATCTCTGGTACCGGAGAGGCGGAGGAGTCTGGATCTACTGTCCCAGAGCCCGGCCCAGAGCCCGACCCAGAAGACACCCAGCAGCAGCGGTGGCTCGGTGCCCGACGGGGGGCCCAGAGGCCCGTCTTTCGCTGAGAGGACCCCCAGCAACGTCATCATCCTGGAGAACACCATCAGACTGCCGTCCCCGGCGCTCCATACCCCGCCGGACAGGAGCAGAGCACCCAGCAGCCACGGGTCCATCTCGGATGGGGAGCGCATGACAGTCCTGGATTCCAGCAGCCTGTTCTCCCCGGGCAGCTTCACCCGCAGCCAGCCGGACGGAGGGATGGCAATGGAGACGGAGGACGACGCCCCCAAAGAGAACCCCTTCTTCAAGCTGCGCTCCTCCATGGGGCTGAGGCCGGAGGTGGAGCAGGACATCCGTGAGGCGCAGCAGAGGGAGCAGGAGCTGCGGCGCCAGCGGTACAGCCTTTACGGCAGAGGGGACAGCTGCGGCCCACCCAGCACtgagccccccacccccagccgcACCCCTACCCCCAAccgcacccccacccccaacggGCTGCCCACCCCGTCACCGTCCCCCTCGCCCACCCCTTCAGCGCGGCAGTCTCTGGGGAAGCTGGACGTCACCTGGCCCCCTCCCAGCCAGAGCAGCGAGGAGGCCCCCATCCAGACAGAGATGGACCGGAGCCCCAAGGTGCCCCGGCAGAAGACGCCGCTGCTGCAGCGCTGGGAGACGGGCATGGTGAACGGTCATGCCGAGGAGGACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62317 lncRNA downstream 156859 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA downstream 163421 3425782 ~ 3437347 (-) True G49810
TU62310 lncRNA downstream 208678 3390203 ~ 3392090 (-) True G49806
TU62306 lncRNA downstream 221444 3373544 ~ 3379324 (-) True G49802
TU62058 lncRNA downstream 625615 2974949 ~ 2975153 (-) True G49614
TU62366 lncRNA upstream 80116 3691380 ~ 3693261 (-) True G49858
TU62368 lncRNA upstream 109705 3720969 ~ 3735477 (-) True G49860
TU62373 lncRNA upstream 111965 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA upstream 168511 3779775 ~ 3781104 (-) True G49871
TU62533 lncRNA upstream 550911 4162175 ~ 4163650 (-) True G49984
AMCG00008532 mRNA downstream 42926 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008531 mRNA downstream 72293 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008530 mRNA downstream 96354 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008528 mRNA downstream 230155 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008524 mRNA downstream 253995 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008535 mRNA upstream 7385 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008547 mRNA upstream 158420 3769684 ~ 3777037 (-) False AMCG00008547
AMCG00008553 mRNA upstream 208751 3820015 ~ 3822415 (-) True AMCG00008553
AMCG00008554 mRNA upstream 250203 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008558 mRNA upstream 279654 3890918 ~ 3912084 (-) True AMCG00008558
TU62046 other downstream 692103 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1515762 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1719806 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1750486 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2660116 931892 ~ 940652 (-) False AMCG00008428
TU62371 other upstream 163319 3774583 ~ 3777354 (-) True AMCG00008547
TU62870 other upstream 2137626 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2176486 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3336625 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3534361 7145625 ~ 7151472 (-) True G50476

Expression Profile