RNA id: AMCG00008538


Basic Information

Item Value
RNA id AMCG00008538
length 4216
RNA type mRNA
GC content 0.48
exon number 7
gene id AMCG00008538
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3758827 ~ 3771337 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGTCGAGGCGTGGGCCAATCACGGCGCGGCCCGCAGACGCACACATGGGAGAgtttaaaacagaaagaaaactttTGGAAAGTGGTCCAAAGCTTTGACACAAGCAGGATAACTGGGGAGAAAGCGACCGAAACGACACGCCGCCTGCAACACTTTTTATTCttgcgttttattttatttttgccttgCCGGGGACTTTTAACACTGTGCATTTGTagatctctttatttatttgttttcctcctattattatttttttaaactcgACTGTGAACAGCAAGAGACCAAGATGTCAACACATTTCATCAGAGGACCAGCGTATGGGCTTTCAGCTGAAGTGAAGAGCAAGCTTGCCCAGAAGTATGACCCCCACAAGGAAGAAGACCTGCGCCTGTGGATCGAGGAGGTGATCGGCAGGAAGATCCCCGTCAACTTCATGGACGGCCTGAAGGATGGCGTGATCCTGTGCGAGTTGATTAACAAGCTTCAACCCGGATCCATCAGGAAGATCAATGACTCCCCCCAGAACTGGCACCAGCTTGAGAACATCGGGAATTTCATCAAGGCCATCACGGACTATGGCGTGAAGCCCCACGACATCTTCGAGGCCAACGACCTGTTTGAGAACTACAACTACACCCAGGTCCAGACCACACTCATCGCCCTGGCAGGAGTGGCCCAGACCAAAGGCTTCCACACGAAAAACAACGTGGGGGTGAAGtacaccacaaaacaaaaccgtcGCTTCACCCCGGACAAGCTGAAGGAGGGACGCAACGTCATCGGCCTGCAGATGGGCACCAACAAGTTCGCCAGCCAAAAGGGCATGACCTCGTACGGAACCCGACGCCACCTGTACGACCCCAAGACTGGCGTGGAGAAGCCCATGGACCAATCCACCATCAGCCTGCAGATGGGCACCAACAAGGGAGCCAGCCAGGCTGGCATGACCGCCCCGGGCACCAAGCGGCAGATCTTCGACCAGAAGCTGGGCATGGAGAAGTGCGACTCCACCACCGTGTCTCTGCAGATGGGCACCAACAAGATGGCGTCGCAGCAGGGCATGACGGTCTACGGGCTCCCGCGCCAGGTCTACGACAGCAAGTACTGCCTCCCCGGGGACTCCTTCGACAGCGGCGACGGGGAGAACGCCTTCGACCACAACGCCAGCTACCAGAACTACTCCGACTAGAGCCCTGCCCTCACCAGGCCCAACCACACCCCTACCGCAGCCAGAAACCCCTCCCCGTTAACACTCGCCAAGTGGGGCATGTATATTGTTCTCTCCCCACCCACCCTGCCCCTGCCGTGCTCTCTCTGTACTTCCATTAGTGTCTGCtatgtctgtgtatgttttctttatttatttttgaacatttaatcaatttttagAAACCCACCCACGCTCCCCCGAAATCTTGTGCTGCATCCTAGCTGGCTTTTATAAATCCTATTTTTATTGAGCCCCACAGGCCCAGGGCACCGCAAATTTACCAATCACACAGGGGTCTCGGGTTAGCTGATCTGAGTTAATCTGCGGTTGATTTGTTTTCGCTCGCTCCTCGGACAAAGGCAGGCTGGCCTCTCGCTTGTCGCAGACTACCTTTAATACCTGTCTTGCCTAGAGAGCTCCAGCACATCATCAAATCTGCACTGGAATGGCTTTTTGTCAATATACCAAGGGCTGTGCTATGAGCCGTAGCAAAATAACTCTTTGGCCCAGGGAAGCACAAAGACATAatcaaaaatatgattttccaTGTACTGCACTTTCATAGCAGGGCGAGATTTGAATTGGACACTATCCTGACAGCGTCTCCGGGCCCTGTGCGTGTTGTCTCATCCATCTGTGCACTTTAATCTGCTCCACACCAAAGAGAAAACCCACCTTCAAACAGTGGTGTTAAAACTGTAATCGGTGTGATCGAAGACCACAAAGTTGCAATAGTGTGCCTATCCCAATACACAATTGCGGTGTTGAAAATGTCAAACGTGGAAACGCCTTCCTTACGAGTTGGAGGTGCCCGCCACTCGAAAACCCGCGTTTATTTTCTTGCAGTGTAAACTAGGAGATGTGGTGCCACAGTATGCTGTGGTGATTTGGTGGGCCATGAATTGAATCGGGTCACAGACCGGCGTGCTGCATGCATGTACGTGTTTCTGCCGTGTGCACAATGTGCATTGTTGAGGAGAGTGtgaatgcatgtgtttgtgaAGGTGAACAGTTTGCCATGCAAGATGcccctttttgtatatttaaggTGGAGCACTTTTGGAGAACGCCACAGGGAGCCGGGGCATTAACACCAGATGAGGACAGTTTAGGAAGCCCAGGAAAGCATTATTGAAGCCGGCCGCTGTGTAGAATCCCAGCTCACATGCTTTGTAATGCTAGGAAACCAGTTCACAGCCTCCCATGTAGAGACTGAGCATGCTGTGCCTTAAAACCACCCTTGTGAGGTCCATTGCATAGATCTTAAGCTAGTGAATACCTTTCCTCCATCCAATCCCCCTCACAGCAGACACAACCGTGCATTTCTCTGTCAGGGTAATGCTTCCCCCTAGTGTTCACAGTGGTGCTCTGCTGGTGGGGTGTTGCATAAGCGAAAAACACTCTCGTCCAGCTCCCGTCCAGCTGCACGGTACAAGTCCTTCCCATCTTCAACAGAGCGACACCAGCGCACCTGTTTGAGGCCTTGTAAAGATACAGAAGAGCTGTGGGAGTTTGAAGCCAGGgtgcagtgtgttgttttaCACTCTGAAGCACTACTACATCATATATCCGTCTGTATCATTGATCACTTTAACTGAACTACTCTCCCAGTTATGCCTCTTGCTGTCATGGCTCTGCATTTCAGTACAGCACTGCCGACTGCTCCCCTGTGTTAATCCCCCATACTGAAGCACATTCCCACCTCCTGTAGTGTTAGCTAGACATTCCAGCCCTGACCAACTCCACAAAACCTTCATTATGTTGCACTGCTATCAGAAGCACACAAAAGTATTTTGGCTTTGGACTATACCGCTCCCATACTACCGGCCTAATGCAAACTGCACTGGACCTGCGCGGAATAGGGGCTAATTCTCCTGCATGAGGCTTTCAACGTCAGATTAAACAATAACTAAAGATTATTATTGGTTTAACTGATCTGTATGCGGCTGTTGAGCTAGAGTCCAGGGGTgactaaccctggtcctggagagccgcagggtttgcgggtttttgttttatccagatcgttatctgcttaattgaaccaattatgggtcttaattaggcaaaatgtccctgtgttcaagatatccattgattggtaattaagagagacctggaaatcctgcaggattgcggctctccagtACCAGGGATAGCCACCCCTGAGCTAGACGCTACATCCACCACTGCAACACTTGGGAACAAGTCCGTCCGTCCATCCCCACCCACCCCCTCGCAATATAAGCAGGTGTTTTGAATGCGgtataattgattaattagtgACAATAAAAGAACAAGGTCAATCAAACCATTGCGTGCTATAGGGACAGTAGCGTGTGACCAGCTTGTCAATGTAGTTTTACAGTGTGAATAGGCTACATCATTCCTATAGACAGTGTAATAATTTGCCCctgtcttgtttgtgtttatccTGGAAGTACCCCTAAAATCCCAGAGCCTTTGTTTAATGAACAGGACTCATTGGTTAAATGCAGGCATGGTTATTCAATAATATCTTAAATGTGAGAATTAAATGAAACGTCAGCAAGTAGCTTGTGTTGATGGGACTGTATTACACTCAGTTTGCTCAGACCGCATGCGTCAAAAGAAATTGAGGATCATGTGTTAATTGAAATGGTTGCTTTGGAAACGATGGGCAGAATCGGGATGTATTTTTATAGTGCCTTAAGCGTTTACCATCCGCTCAGACTGACCATTTCACTTCACCATCTTCCTTTGTTAAGCTTTTAGCCATGTTTCAACGCATACGACATCTTTGAGCTGACAAAATATGTAGcaaaaatgaatgtgttcatAAGCAGTTTCAGAATTGAAATGCCGAAATTATCATTTTGGCGACGTGAAAAAGGTCTTAATGCAGAGTAGGCTGtagcagaaatgtatttgaaaatcggtcactgttttcaaattatatagaaatttgtattgcacttggaatgaaaatgtgtaatgttaataaacactttttaagTTACCAA

Function

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 313700 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 314930 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 399298 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 716232 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 847888 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 191791 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 253764 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 263412 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 536489 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 691025 4462362 ~ 4468763 (+) True G50055
AMCG00008546 mRNA upstream 12019 3746220 ~ 3746808 (+) True AMCG00008546
AMCG00008541 mRNA upstream 12722 3745827 ~ 3746105 (+) True AMCG00008541
AMCG00008543 mRNA upstream 15145 3742829 ~ 3743682 (+) True AMCG00008543
AMCG00008545 mRNA upstream 16160 3738624 ~ 3742667 (+) True AMCG00008545
AMCG00008544 mRNA upstream 20713 3737746 ~ 3738114 (+) True AMCG00008544
AMCG00008537 mRNA downstream 6155 3777492 ~ 3781027 (+) True AMCG00008537
AMCG00008539 mRNA downstream 12212 3783549 ~ 3785692 (+) True AMCG00008539
AMCG00008548 mRNA downstream 18258 3789595 ~ 3809072 (+) True AMCG00008548
AMCG00008549 mRNA downstream 40248 3811585 ~ 3819176 (+) True AMCG00008549
AMCG00008550 mRNA downstream 52657 3823994 ~ 3834579 (+) True AMCG00008550
TU62012 other upstream 869931 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 988783 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1547313 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1615517 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1653254 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 384751 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 390721 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 790654 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1824686 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1967204 5738541 ~ 5742750 (+) True G50243

Expression Profile