RNA id: AMCG00008546



Basic Information


Item Value
RNA id AMCG00008546
length 528
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00008546
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3746220 ~ 3746808 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATCGGTTTGCCTTGCGGTGGCTCCCCTCCCTGGTGTGGCGGACCCCCTGTGTCGGCCGGCTTTGGGCCCAGCTGAGCCCCTCGCTGCCCCAGTGGACCCTGTCAGCTGTTCGCAAGCTCTTGGGCAGGAGGAAGGCGGTCAAGGGGTCCCTGGTGGGGCAACCACTCCTGGAGTGGATTTTACTGTATGAAGACACCCCCTTTGCTGGGACTCCAGGGGCTCTCTTTCGCAACAGAGCAGCCCTTTCCTCTGACAAGAGTGTCATTGCCTCCCCACCCTCCCTAATTCCCCCAGGTGGGTATCCTCCAGGGGCCTGCGAGGGACCAGATACTGTGAATCCTGCTGCTCTGCTGTGCTGCCGTGGGGGTGATATTGCAAGGCAGGCTGGGATAAAGGCTGGGACGGATCACGCAGAGTCTCCTGTGCCCGGCCGCCCCATTTCATTCCCACCCACTCCTCCCTCCAGAACCACACAGAACTGCTGCGAACTGATTGAAGCTGCTCGCAACTCTTGGACCTCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 301093 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 302323 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 386691 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 703625 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 835281 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 216320 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 278293 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 287941 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 561018 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 715554 4462362 ~ 4468763 (+) True G50055
AMCG00008541 mRNA upstream 115 3745827 ~ 3746105 (+) True AMCG00008541
AMCG00008543 mRNA upstream 2538 3742829 ~ 3743682 (+) True AMCG00008543
AMCG00008545 mRNA upstream 3553 3738624 ~ 3742667 (+) True AMCG00008545
AMCG00008544 mRNA upstream 8106 3737746 ~ 3738114 (+) True AMCG00008544
AMCG00008542 mRNA upstream 11107 3734868 ~ 3735113 (+) True AMCG00008542
AMCG00008538 mRNA downstream 12019 3758827 ~ 3771337 (+) True AMCG00008538
AMCG00008537 mRNA downstream 30684 3777492 ~ 3781027 (+) True AMCG00008537
AMCG00008539 mRNA downstream 36741 3783549 ~ 3785692 (+) True AMCG00008539
AMCG00008548 mRNA downstream 42787 3789595 ~ 3809072 (+) True AMCG00008548
AMCG00008549 mRNA downstream 64777 3811585 ~ 3819176 (+) True AMCG00008549
TU62012 other upstream 857324 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 976176 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1534706 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1602910 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1640647 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 409280 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 415250 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 815183 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1849215 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1991733 5738541 ~ 5742750 (+) True G50243

Expression Profile