RNA id: AMCG00008547


Basic Information

Item Value
RNA id AMCG00008547
length 803
RNA type mRNA
GC content 0.55
exon number 4
gene id AMCG00008547
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3769684 ~ 3777354 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGAGTTGTTTTTGCGCCCTTTTTCTTTGCGATCTTGCAATTAGTATGTTCATGTTAACGAAGGCTGCCGTCTGCTAGCCCGCCCGTTTGAAGTGCGAGAAAGGGTTTGAGGGTCGGGCGGGGGGCGGTGATGGGAAAGGCGACACGACTGTGCGGGCTCTCGCAGCGTGAACGTAATGACGGCGTGTTAATAGCGCCTGGGCATCCGGGTGTATCAGGAGCGAGTCGGTGCTGGGCTGTTTGTTTGACTCGGGGGTCCAGTAAAGTGCTCGGCGGGGGTCCATGAAGGCACAGATTTCATCAGTCATAACCAGCCAGCGTGCGGGGGGACAGCACACGTGATGACGCCAGACGCACTCAAACCCGTGTCACCGAGCAGGGCAACACATGTCTGCAACGCGGGCGTGTGATAGCTCTTaatcttcattttaaacacacgTATTGTCGAGTCTACACGTACACGTCACTGCTCTAAGgtaTAATGGGTCGCCGCAAGTCAAAGAGAAAGCCCCCTCCCAAGAAGAAGATGACGGGGAACCTGGACACCCAGTTCACCTGCCCCTTCTGCAACCACGAGAAGTCCTGTGACGTCAAGATGGAACGAACCAGAAACACGGGGATAATATCGTGTACGGTTTGCCTAGAAGAGTTCCAGACCCCTATTACCTGCCTCAAACAGGTGCGCTGGTGTCGCTCTGTTGAAGATGGGAAGGACTTGTACCGTGCAGCTGGACGGGAGCTGGACGAGAGTGTTTTTCGCTTATGCAACACCCCACCAGCAGAGCACCACTGTGAACACTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62368 lncRNA downstream 34207 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 76423 3691380 ~ 3693261 (-) True G49858
TU62317 lncRNA downstream 325775 3414181 ~ 3443909 (-) True G49811
TU62315 lncRNA downstream 332337 3425782 ~ 3437347 (-) True G49810
TU62310 lncRNA downstream 377594 3390203 ~ 3392090 (-) True G49806
TU62382 lncRNA upstream 2738 3779775 ~ 3781104 (-) True G49871
TU62533 lncRNA upstream 385138 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 541746 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 1043203 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 1050017 4827054 ~ 4829621 (-) False G50126
AMCG00008535 mRNA downstream 144592 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008536 mRNA downstream 158420 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008532 mRNA downstream 211842 3554539 ~ 3557842 (-) True AMCG00008532
AMCG00008531 mRNA downstream 241209 3521469 ~ 3528475 (-) True AMCG00008531
AMCG00008530 mRNA downstream 265270 3502762 ~ 3504414 (-) True AMCG00008530
AMCG00008553 mRNA upstream 42978 3820015 ~ 3822415 (-) True AMCG00008553
AMCG00008554 mRNA upstream 84430 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008558 mRNA upstream 113881 3890918 ~ 3912084 (-) True AMCG00008558
AMCG00008557 mRNA upstream 165131 3942168 ~ 3946340 (-) True AMCG00008557
AMCG00008563 mRNA upstream 192309 3969346 ~ 3980969 (-) True AMCG00008563
TU62046 other downstream 861019 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1684678 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1888722 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1919402 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2829032 931892 ~ 940652 (-) False AMCG00008428
TU62870 other upstream 1971853 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 2010713 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3170852 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3368588 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 4124298 7901335 ~ 7902606 (-) True G50602

Expression Profile