RNA id: AMCG00008549


Basic Information

Item Value
RNA id AMCG00008549
length 3382
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00008549
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3811585 ~ 3819176 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAGTTTTGTAGGCCCCTCCCCCGTAGtagtaaaagaaagaaagacagttTTCGGCTACACCAAGTCAAGCCGCTTATCTCTGGTGCCACAAGTGCGCAGTGCATCTCCAGTGAAGCGGAGGCTCCGGCGCGCAGCGATGGTTACTGTCCCCAGTCGCAATGCACGCACTTACACCGCTGAAAAACGGCGCAGCTCTGTTATTTCTCTTTGCCAGTGTGGCTTCATTAGATGTAGGGCTGCGGGATATTGACACCAAAGCTGCACTGTTGCTGGCGGTGGAACCGGAGGAtccaaaatgttttgcagaGACGACGAGGAACCTAATATGTTTCTGGCAGGAGGACGGGCCCCCCGAAGCATACACCCTCACCTACCGATACCAAAGCGAGAGACAGAGCAGCAGGTGTACTGTGGTGGCGCAGAGGCTGGGTAATCAGACCCGTTACTTGTGCGAGCTGACCTCTGTGCAGCTCTTCATCCCGCTGGACATCAACGTGACCATGGGCGACCGCGTGGTTTTCAACAGAAGCCTGTCCATTGACCaagtctTCCTCCTGGATCCCCCAGGGAACCTGACGGTCACACGTACCGAGAAGCCGGACCAGCTGCTCCTGAGCTGGCTGCCCCCGAAGGTCAAGTACATGGATGATGTCATGATGTACGAGGTCAGCTTCTGGACGCCGGACTTTCAGCTCCACAAGACCAAGCTCGTGAAGGGCGAAACGGAGTACCAGCTGAAGGGGCTGTGGCCACAGACCGTCTACACTGCTCGGGTCCGAGTCAAACCGGACGGGCTCTCCTACAGCGGCTACTGGAGTGCCTGGACCGAGCCCGTCGCAATGGAAACGCCCCCGACAGAGGTGGACCTGCTCATCCTGCTCCTGTCGCTGGTCATCTTCCTGATCCTCGTCCTGCTGTCGCTCACCACCCTGCTGTCCCACCACAGGTTTCTGCTGAAGAAAGTGTGGCCGCTGATTCCCAGCCCAGAAAACAAATTCCCTGACCTGTTCACGGTCTACAAAGGGGACTTCCAGGAGTGGCTAGGCCAGAGCAACGCCCACCTGTGGTGGAGTCCGGGCTTCTTCTATGTCGAGGACCTGACCGCCCCTCTGGAGGTCCTGTCGGAGGTCAGGCCGGCTGCCCACCCCGGGCCCAGCACGGTGCCCCCCAGAGCCTGGCCGCAGGTCCCGGCGGACGAGGAGGGGGAGTGGCAGgcgggggaggaggaggagcagcagggaCACCTGGACTCGGAGCAGTGGAAGGCGGCACGCGACCTCTGGCTGTCCTACAACCGCGCCTCCCTGGCCGGGCCACTGGAGTCCAAAGATGCTTATGTGATCTTGAGCCCCGACTGCCTCCAGGCCGGGCCCCAGCCGCAGCAGGGCAGCGAGCACGATGTTTCCGAAGAGGAGTCTCCCCTGCAGATGTTGTTCTCCCAGTCCGATCCGGGAACGCcaacctcctcttcctcctccgcCCGCGGCTCTCTCAGGCACAGCTCTGGCTCCGCATCGGGGGACCAGCCCTCCTTGGGCACCAGTTCCGACCTGTACAATCCCAGCGTGGGCCTGCTTTACCCCCGTACCTGGCCCCCAAAGGACTCCTCCTACGCTTACCTGACGGTGGCTGACTCGGGTATCTCCATGGACTACAGCCCCATGGGCTCAAGCAGGACTGAAGTGATCTATGCAAACGAGTACAAGAACCACATCCCTCTGACACCAAACCAGCTGCCCCTCCCCTGCCACACTGTCCCCATTGGCTGCTGAGTGGGAGGATAGTACCTTTGGATTGGCATGATGTTGGTGACAGTCAACATCGGGCGCACGAATGCTTGCAGTTCTCCGATTTGCAGGTTGGCTCTGGGGATTTGAGACATTGTCATAAGACCAGCTGACATGGACAGGGCCTTCCTGGAAGCTGTTTAGAGAGGGGGTGAGAGGCTCCCACAGCTGATCACTCTGTTCTCAGTGGGAGGCAGTGAGGCCAACGTAGAGCTCGGAGCAGGGTTTAACCCAGGCAGGAGGAAGTGTCTGAAGAACCTCATGCACCACACAGGTGGCAGTGTGGCAGCTCAACTGGTTGGGATCTCCACTTCtgtgttataaatatatttttaaaaggaaaaaaagggttactttttataatctttttttattattattccaagtattattattcatgttttaatttgatgtagGTTTTACCATGTCTTTTCCTGTGGCATTGCTtctggttattctgtgtcatgTCACACAGAGCCCTGCCCTATTAAATCAAGAGATGGAATGAGGGGGACAAAATTCCCAGCACCACATGGAGCACAGATAAATGCGCGGGGGTCTGCTAGCTTGGTGTGGTGCATCACGCAGAGCTCTGATGCACAGGGTCAATGCACAAGGCAGCTATTTACACAATGGGTGTGGGAGAGCACGGTGGCgaaaatgtaactatttttgCAGGGATTTTCCTCCTGAAATTGCACCACTCTGTAGTCCACGTTCCCCGATTCCTGATTGGATGATTATTAATGCCAGCCAGACATCCCTGCAGAATAACTCTTGAGTTCAGTGTGGTACAGCACCGTGCCACAAAGCGCCTTTGTGAAACCTTACAGCTACACATCCCCACTCTTCAGTTACTGTTACAAGATGCTTCACAGCCCTCGGGCATTCCCTCAATCTAGTGCAGGGCTCTGAACGTTTCCCAGAATGCAGTGCAAACCCGTGCGCAGCTTTCGCTGCCAAATCAACAGCGGTCGGTTCCCCCGACTTATTCAACCATCGTAACGACTGCCGAGATGGTCTGGAATCGAAGCTGAAGGGCTATAGCTGTGTCTGAAAATCAGTGTTAGAATTTCCATTGGCTCCTCTGTCATTTTATACCCTCCCACGCTATATACTCTTCAGGAGGCAGCGTGCTTGTGTGTTGCCTTCCCTCCAAGCTGTGCAACTGAAGTTTTATGTTTCCACCTGTAGCTACAACCTGTTTGAACTACCCATTGTAAACCACCTGTCAGTTTGCAGTGCATTGGAGCAACAGTCATCGATGAGATGGCATTGGAGTCCAGAGAACGGCCGCTCGGTTCTCGTCAGTCTCGCTGAAGATATTTTCTCATCTGTAGCGgcctcttcccctctcccacAGCTTTGCTGTTCCCTTTGCTGGTCATTCCTGAATGCATTGGCAATTTGTAAATACTTGAACCGTGTTTTCTATCGCGTACTTgtacagagatttatttttttatgatgctACCGACCTTTACTGAAACCTGgagtgtacctgtgtgtgtaagATCTGTATACATTGTAGGGTTCAGCTAGGCGGATGTtatgttacagtttttaaaaataaaatgtcttaaacTGCACACAA

Function

GO: NA

KEGG:

id description
K05079 EPOR; erythropoietin receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 366458 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 367688 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 452056 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 768990 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 900646 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 143952 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 205925 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 215573 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 488650 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 643186 4462362 ~ 4468763 (+) True G50055
AMCG00008548 mRNA upstream 2513 3789595 ~ 3809072 (+) True AMCG00008548
AMCG00008539 mRNA upstream 25893 3783549 ~ 3785692 (+) True AMCG00008539
AMCG00008537 mRNA upstream 30558 3777492 ~ 3781027 (+) True AMCG00008537
AMCG00008538 mRNA upstream 40248 3758827 ~ 3771337 (+) True AMCG00008538
AMCG00008546 mRNA upstream 64777 3746220 ~ 3746808 (+) True AMCG00008546
AMCG00008550 mRNA downstream 4818 3823994 ~ 3834579 (+) True AMCG00008550
AMCG00008551 mRNA downstream 17957 3837133 ~ 3844620 (+) True AMCG00008551
AMCG00008552 mRNA downstream 37396 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008556 mRNA downstream 114826 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008555 mRNA downstream 138365 3957541 ~ 3961050 (+) True AMCG00008555
TU62012 other upstream 922689 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1041541 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1600071 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1668275 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1706012 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 336912 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 342882 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 742815 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1776847 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1919365 5738541 ~ 5742750 (+) True G50243

Expression Profile