RNA id: AMCG00008550


Basic Information

Item Value
RNA id AMCG00008550
length 3817
RNA type mRNA
GC content 0.55
exon number 10
gene id AMCG00008550
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3823994 ~ 3834579 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaaaaagaaaacaacacacagctgTTGTCAAGATGGCGGAGATCAGTGCCGAAGAAGAGACGACTCTGGACCGGGAGCCCGTGGACCAGATATCGGCGATACTGCGGCGGTGTCGCGGCCGCCCACGCCTCACGGACACCGACCGGGCGAAGAGGCGGCTGGAGTCGCGGAAAAAGTACGACGTGAGGCGGGTCTACCTCGGGGAATCGCACCGGCTGTGGAGCGAGCTGAGGCGGCGCACCGGGCTGAGCGACGCGGCTCTCGCCGAGTACCTGATCCTGCTGGACTCCATCTACGGGGAGAGGTACCAGCACAAATACGCGGGGAAGAAGCTGACTGCGGAGTTTTGCATCAAGCCAAAAAGGGGGAGGAAGTGCAATGTGAACTGTCTGAGCAGCCTGGTGAGCTGGTACGAGGAGCACCGGCAATCCTGTCCACATGAGCCCCACCTGCACTCCCTGGAGCCGGTCCTGGGCTTCTCCACCACGGCCGTGTGGCAGTGCCAGGCCGGCCACGGCTTCCTGCAGCACCTGGTCTCGCCCAGCAAGGACGCCAGTGAGTCGGAGAACGAGAACGAAAATGAGCCCGAGTCGGAGCTGGACCTGTCCCCCGGGGCCAGGGAGACGCACTGCACTCGGAGGAAAGCGGCCGTTGCTACCCGGCGCCGGCAGGGTAAATACCACGGAGAACGGGTCGAACTGCAGAAGCCAGGCCCGGTTCCCGTCCGTTGCCGTAGACAGGTGATGGAAACGGTGCAGGAGTCAGAGGCTGTGAGCAGTGGGCACTGCGAGCCGGCGGTCCCAGAGCCTGGACTCACCCTCCCGGGCCAGGATGCCAAGGAAGGGCAGGCAGACGCTCCCGACCAGGCCGAGGCGCAGTCCCCCTCCAGGCCCCTGTGGGACATGGAGGTGGTTTTGGAGGAGGAGCACGCGCTGGAGGGGGACAAGGGGGACGGGTCCTCGGCTGCTACAGAAAACGGAGAGGGGACCACTGGGCCACTGAATGAAGAGGCGTGTCCCTCTGACCTTGACACCCAGAAAGCAGGGCAGGCTTCTAGGTCCCAGAAACAGGGCCCGGTTGTGCGAGTGGTCCACAATAAGCAGATGGTCCACACCAGCCTGGAGGAGGGGAGCCCGGGGGACCCCTCGGAGGAGAAGAAAGGGCACAGCTCGATGCACAGGAGCAAGAGGAGCCGGCGGGGCCCCGTGATCGAGGCGGATGGCATGCTGAAGATGTTTCACTGTCCCTACGAAGGCTGCAGCCAGGTGTACGTGGCCATCAGCAGCTTCCAGGTGAGCGGTCAGCGTGGCGCTCTCGTGCCGCTCCTCGCGGTCACCGTTAACCATGTCAACCTGGTGCACAGGAAGGGCCGGACGAAAGTGTGCCCCCACCCGGGCTGCGGGAAGAAATTCTACCTCTCCAACCACCTGCACAGACACATGATCATCCACTCAGCCTGTGTTGTGGATCACCCACCCACAGGTGTGCGAGACTTCATCTGCGAGACGTGCGGCAAATCATTCAAGCGCAAGAACCACTTGGAGGTGCACCGGCGCACACACACCGGGGAGACGCCGCTGCAGTGTGAGATCTGCGGGTACCAGTGCCGGCAGCGGGCGTCTCTGAACTGGCACATGAAGAAGCACACCCCCGAGGTGCAGTACAACTTCACCTGCGAACACTGCGGGAAGAGGTTCGAGAAGCTGGAGAGCGTCAAGTTCCACAAGCTGAAGAGCCACCCCGAGAAGCAGGCGgcgtgagagcgagagagaccgCTGCTCCGGGAGATGGCCTGGATCCGGGCTTCTGTGACGAGAGCACATTCCCaagcctctctctcacacgACCAACAGCTGAGGCACCAGACGGGAGCCACTGTGTGGGGTGCTGCCAGGAAGTGGGGAAGCTCCTTGGGTGTCTTCTCCAAACAACAAACTTGAcctcctgtttttcttcttccctttGGATTCTGTCTATcccgcccccacccccagaTCTCCTATTCTCCTATCTCGTTCCTCGGACACCCCCAGTCTAGTTCATATCGTAGCTTCATTGTAAGTCTCCTAGTCTCCAAAGACGCAGATCAATCAGGGCTTGATGAATGGAGGGCTGTGACAGGGAGTGCTCTTTGGAAAGGCTTGTTCCCCCACGATCTCTATTACGACCCAGACACTTTGCTAGAGAAGGGCCTGCAGTGCTCCCGAGGCTTTATAGATGGTTGACCTGTGTGGATCTCTCCCTAAGCTGGACTCTTCCCCCTCCCTGCCCAGTAATCTCATCTGCACCGTCCTCCTGAGGGCATTTCTTGGCCCTGGATCAGTTCTTTTGAACCTTTGGGAACAAACCTGCCTCCTACATCCCTCTGTCGGCTCCCCATCCCAATCAGACTGCCTTTCCCTGCTGATTCGGGAGCAGTTTCGATGTGGAGCTGCAGGGGGCGCTGCTTATACTTTTCCAGCATTATCTCCCAGGAtttggatttagttttttcccaaATTGAAACAATCCCCTGCCCCCCAACTAAATAATTCCTTTAGGGGGGTGTGAGTACTTCAGTTCACAACCAAGACCAAGTCCCAAGATCATCCTATTTCGACCTtcaataaggaaaacaaaaaacggcTCGGGATATCTGGGTGGATATTTAAAATCGGTGTCCCACCCTTTCCCTCCTGCTCTGCTGCATCATTCTTCCACACGCAGGATGGGGGCGGCGGAAGGTTTGTTTCATCCACAGACTACCTGGtttcaattaaaccatttcGGACATTCCACTCGTTTGAGGTTTGTATTTGATGTGACCTCCTGCCCCACAGTTTAAACAGACCCATGTTTCATGTGGGCTAGGAGTATTGCCCGAAGAGCCCTGAATTCTCTGCTGGTCTAATGAGTGTGTTGGCCACACGCACACACGGCTGAAATAGTGATACAGCGAAGGATGATCAGTCTCTTCCTTCTGGCTTTTTTCGATGTCACTTTTTCATACTGATGCAGGGACTGACACTGAACTCCCGTTTACACGCCAGCTTGAGACATTGCAGGTTTTCCCCAACTAGGATTTTTACATAGACATTACGCCACACCTTACCTTATCCCggctaaatgtgtatataagcctctgttttttgttttgtttttgtttttgttttgtctgtgcaATCTGGATAACTGCCAGGCACTCTGAAACCCTGAAACGGATCCCGCTGCTGAGCAATGGGTGTCCTTTGTCATCCTTGCTGAGGAACAATAATGCGCACTTTAATGTGGAGGTTGTATAGACATTGTTTCTGACACTTCACGGTATTTAAAAGGAAgaataacaaaactgaaatatctatGGCTTTCACCCACAGCGGTGACTTTTGCGTATCGATGGGGAGCTTGAGGTATGATTGTGGGTGCTGTGTCTGTTTGGTGTGATTATGACGGCAGGATGAAGAGGATCTGCTAGAAGAGTTGGGGGCATTCCCACAGCAATTCAGATAAGGATGGAAAAGGCTGTGCATGGAGAACAAGGGCGGGACATTCGTCTCGGGACGGCCGAGTCCGGCCAGCTGGTTAAACCAAACcttgtgtcagtgtctgtgaaatgaaaaacaagaaaaaagtgtGTTGCTTTTTTGGCTGAAAGTGGTTTGTGTTCCTCTGAGATTATAATGCACTAACTGAACACTGTAATGTGACAGACCTCTGTTTACTGTATTATAGAAATgctaaatatgtaaaatatgtgaatataaattcaaatgtatagaGAATCCCCCCAGACTCAAGAAAGCCAGTTTGGGTCTTGAACAATAAAACGAGGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 378867 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 380097 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 464465 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 781399 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 913055 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 128549 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 190522 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 200170 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 473247 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 627783 4462362 ~ 4468763 (+) True G50055
AMCG00008549 mRNA upstream 4818 3811585 ~ 3819176 (+) True AMCG00008549
AMCG00008548 mRNA upstream 14922 3789595 ~ 3809072 (+) True AMCG00008548
AMCG00008539 mRNA upstream 38302 3783549 ~ 3785692 (+) True AMCG00008539
AMCG00008537 mRNA upstream 42967 3777492 ~ 3781027 (+) True AMCG00008537
AMCG00008538 mRNA upstream 52657 3758827 ~ 3771337 (+) True AMCG00008538
AMCG00008551 mRNA downstream 2554 3837133 ~ 3844620 (+) True AMCG00008551
AMCG00008552 mRNA downstream 21993 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008556 mRNA downstream 99423 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008555 mRNA downstream 122962 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008560 mRNA downstream 174619 4009198 ~ 4010145 (+) True AMCG00008560
TU62012 other upstream 935098 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1053950 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1612480 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1680684 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1718421 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 321509 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 327479 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 727412 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1761444 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1903962 5738541 ~ 5742750 (+) True G50243

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000333_00334181_00348391.mRNA True 1948 mRNA 0.53 10 CI01000333 334181 ~ 348443 (+)