RNA id: AMCG00008551


Basic Information

Item Value
RNA id AMCG00008551
length 1733
RNA type mRNA
GC content 0.50
exon number 8
gene id AMCG00008551
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3837133 ~ 3844620 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGACCCAGCACTACAATCACATCACTCCGCCCCCTCCCCACCCAGAACCACCAACCTGTTTTAGAGGTGCAGGTCTCGtccagagagcgagagagagcgagagagaacgAGACGGACACCAGGGAATCCTACACTCTCAACAACAGCGCAGTTCCCATCCTGTGCCATACCGCACCTGAATCAAGGTGtggctgtactgtgctgtactgcgcCGTGACTCTACactactctCTGGCGGGCGCTGCCATCCTGGGCGTGGGCGTGTGGGTGAAGGTGGACAGCAGCTCCCTGGGGGGGTTGCTGCAGAAGCTGGGCCAAGGGGGCGGCGTGGCGAGCCAGCTGCTCAACGTGGGCTACCTGCTGATCGCCGTGGGGGCCGTGCTGCTGGTCATGGGTTTCCTGGGCTGCTGCGGGGCCATCCGTGAGAGCCAGTGCATGCTGCTGCTGTTCTTCATCATAGTGCTGATCGTCTTCATCGCCGAGGTGGCTGGGGCCGTGGTGGTCCTTGCCTTCTCCTCCGTGGCGAGGGATCTGATTCAGAAGCTGGGCGATGAAGCAGTGAAGAACATTAAGCAAGATTACGGCAAAAACAGCGAAGTCACCACCTTGTGGAATGAAACTATGACTAAGTTAAAGTGCTGTGGATTCTATAACTACACAGACTTCACTGACTCCCAGTTTGTGAACACCACCCAGCGCTATCCGACTCCCTGCTGCAAGAACAGCACCTGTACTTATAACAACGCCACTGTCTCGgACGTGAGCGGATGTCTCAACTCCTTGGTGACCTTCATCAAGGACAACTCGGTGGTCTTGGGGGCCGTCGGTCTGGGTATCGCTGTCTTGGAGATCGCTGCGATGGCGTCTTCCATGACCATGTACTGCAAGATCTCTTCAAAGTAACGGCCGGCCGGAGACGGACATCCTCATCACTCAGGACCTCTCCATTCCTCTTAGCAAGCTGGCGGAGAAGACTTTGAGTGAAATATCTGCATGAAGCTCAGCAGGCTAAGAGGAAATTGCCACACTCCTCCTCACCCCTGAAggatgtctgtttttattttatgtataatgaTCACTAACAAAATGTGTTGCACATGCCTAAACGAAAAAACGCTCTGCTCTGCTTCCTCTGGCTGCAGTGTCGGCCTCACTGACTCAGGGACGGGAATCAGATGCCCATTGCATAGTGCCGATCCACGCAGGCTTTACTGCAAACCGCACACTCTAGTGTAGTCAGTACAGCAGGTCAACCAATACAGTACTGTCAGTCTTTTATTGGAGTGATTGTTTATTGATTGTGACTTAAATGATTGATGTTTAGTGTCCTCCAGATCTCTCCTTAAACTGACTTTCACTGAGACTTGCATGGCCCCCGCGTCACAAACTCTACTTCATCGTCTTTAGAGGGAATTCCTTCAGCTTGTTATATGAGCTGTGCTTCTGTAATGCACGCGCACACGTATAGATATATAGATTCATGTTTCATTGCTACACAAATGATACTGTTCTGAAATTACAAGCTTCTCAGAGAATGTGGGATAATAcgaattgtgtttttctgtatttttattaagtCCAACAGGTTTTTTACATTCTTGGTTATTTGAGGTCGTATCGAATGCAGCTGAATGCTTCCTTTTACtttatacagaaacaatgaaccAACATCTCCACATTTACTGGAagtgtatttgtaaaatgtcaaataaaaccGAATGTTTAACTTT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17353 TSPAN18; tetraspanin-18

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62241 lncRNA upstream 392006 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 393236 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 477604 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 794538 3027978 ~ 3042595 (+) True G49636
TU62039 lncRNA upstream 926194 2910694 ~ 2910939 (+) True G49599
TU62428 lncRNA downstream 118508 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 180481 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 190129 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 463206 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 617742 4462362 ~ 4468763 (+) True G50055
AMCG00008550 mRNA upstream 2554 3823994 ~ 3834579 (+) True AMCG00008550
AMCG00008549 mRNA upstream 17957 3811585 ~ 3819176 (+) True AMCG00008549
AMCG00008548 mRNA upstream 28061 3789595 ~ 3809072 (+) True AMCG00008548
AMCG00008539 mRNA upstream 51441 3783549 ~ 3785692 (+) True AMCG00008539
AMCG00008537 mRNA upstream 56106 3777492 ~ 3781027 (+) True AMCG00008537
AMCG00008552 mRNA downstream 11952 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008556 mRNA downstream 89382 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008555 mRNA downstream 112921 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008560 mRNA downstream 164578 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008559 mRNA downstream 177905 4022525 ~ 4023493 (+) True AMCG00008559
TU62012 other upstream 948237 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1067089 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1625619 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1693823 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1731560 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 311468 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 317438 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 717371 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1751403 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1893921 5738541 ~ 5742750 (+) True G50243

Expression Profile