RNA id: TU62322


Basic Information

Item Value
RNA id TU62322
length 1820
lncRNA type read_through
GC content 0.37
exon number 2
gene id AMCG00008554
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3430814 ~ 3871269 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgaaaaactaatgaaaatatGTGCAGTGTGAAGGATTTTATTAAGCAGAGAATATAGTCACCATCTTAAAATCAGTTTAAGACCATGAAGACAGAATTGAAGATCAGAGGCACTTACACTAAAAGTCAAACTTGTTTGTGTTGACGGAAAAATGCAAGCCCATTCAGAGCTTTATACATCTCTTGCCATTGTCTTTGTTTGAAAGAGACAAGGGACCCCAAATATTACAGGCTTGTGAATTTCAATTAAGTGAAATCTCATGGTCTACAATTACTGGATtagaaacaatacaatgttcttcgtctacatttgttttattgctgcatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagatatatatagatatatatatatatgaatcagataggttttttttcctctacctTAAGATATAGTCATTTCTACGGAAGCCCTTATggctgaaaaataatatttggcTTAGAAGTACTCCTAAATACTACTTCCAATGCCAGAGCACGCAATGACTACATCAAGCTTGTGACTCTAAGACAAAGGAATGAAAATTACACCCCTAAGATTCACCGGAGGTTAGCATGTTGGGCTGGGGGGTGATATTCCTGCCTCTAACTTTCTGGCTTTCAGTTACAATTaatttgcaaacaaaaaatacttggtaacactttacaataagtaccTCTTATCGGCTATTAATatgttagttaacatgaacaagccagtaactaatgcatcaacaagtcACAAAGTATTTGTTAATGGTAACTAATGCATTAACTactgcactagttagagctcatttGGATACTGttgacagttctgggctccacatttcaagaaagatatcgctgctctagaggcagttcagaggatagcatccagacttattccaggtctgaagggaatgtcctactgagaaactgaggaactgaaccttttcaccctggaacagaggagactacatggggacttgatccaagtcttcaaaatcatgggCAACAACCACATCAaagcagaggagcttttccagattccagacacacgcacccagggacacaaatggaaattgggcttcaaggcattaaaaacataaaacaggagacacttctttacacagagaggcatcacaatctgaacaaactccccagcgatgtggtagaagctgaaagtttgggaacatttaaaaatagactggatgggatccttggatcactcagttattaatggacaccaaacgagcacgatgggtcgaatggcctcctctcgtttgtaaactttcttatgttcttatgttcttactgcatgaattcattaattggtttgtctttcttcGTCTGAATATTCAGAGGCAGTAACTAACATGAGCAAATGACTTggttaacatgaataaacaggACACATTTCAAGGATgacatatttagatgtttgttaatcctaactaacattttattgcaaagtgttaccaaaaaatTGTTCATTATTCGTACATTTGTTATCAAGTACGCAATAGCGAACATGATGCGGGGGTAGAAACTCAACTAAATCCAGCCCATTTTACCCTAGAAGGCTGTGAAAGTCAACATAAATCAACTGTGGTGCCAGATTATAAACTGGAGGAGAGTGGGAGTGGAAGAACCCAATTAGGAATCAAGAACTGATAAATACTGTAGGGCTACTAATTGCCTTCTTCTTCTTGCTCCTCTTCTCCTTCCCCTTGGTGTGGTAGGCGACGATGCGCTGGGACTGGCGCTCCAGCATGTCGCGCTTCAGTACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62310 lncRNA downstream 38724 3390203 ~ 3392090 (-) True G49806
TU62306 lncRNA downstream 51490 3373544 ~ 3379324 (-) True G49802
TU62058 lncRNA downstream 455661 2974949 ~ 2975153 (-) True G49614
TU62048 lncRNA downstream 520186 2909662 ~ 2910628 (-) True G49606
TU61973 lncRNA downstream 606838 2823241 ~ 2823976 (-) True G49547
TU62533 lncRNA upstream 299069 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 455677 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 957134 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 963948 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1745247 5608353 ~ 5610329 (-) False AMCG00008602
AMCG00008528 mRNA downstream 60201 3356714 ~ 3370613 (-) True AMCG00008528
AMCG00008524 mRNA downstream 84041 3345535 ~ 3346773 (-) True AMCG00008524
AMCG00008522 mRNA downstream 195248 3230842 ~ 3235566 (-) True AMCG00008522
AMCG00008521 mRNA downstream 257843 3148638 ~ 3172971 (-) True AMCG00008521
AMCG00008518 mRNA downstream 299755 3128983 ~ 3131059 (-) True AMCG00008518
AMCG00008558 mRNA upstream 27812 3890918 ~ 3912084 (-) True AMCG00008558
AMCG00008557 mRNA upstream 79062 3942168 ~ 3946340 (-) True AMCG00008557
AMCG00008563 mRNA upstream 106240 3969346 ~ 3980969 (-) True AMCG00008563
AMCG00008561 mRNA upstream 119670 3982776 ~ 3995553 (-) True AMCG00008561
AMCG00008562 mRNA upstream 134695 3997801 ~ 4017824 (-) True AMCG00008562
TU62046 other downstream 522149 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1345808 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 1549852 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 1580532 1798845 ~ 1850282 (-) False AMCG00008462
TU61344 other downstream 2490162 931892 ~ 940652 (-) False AMCG00008428
TU62870 other upstream 1885784 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1924644 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3084783 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3282519 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 4038229 7901335 ~ 7902606 (-) True G50602

Expression Profile