RNA id: AMCG00008555



Basic Information


Item Value
RNA id AMCG00008555
length 498
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00008555
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3957541 ~ 3961050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATCCCGCGAACATCACAAGTTTTAACTTGACCGACGAGGCGGGGCACGCTTACCAGTACTCGTTTTCCAACAACGAGCCCCTGTTCAAGGACTACAAGCCCATGCCCCGGGACCTGATCCCACTGCCCAAAGCGGTGCTGTACCTGCTGATGGCGGCACTGGTCGTGGTGGCCGTCGCCTATGCCATTGTGGGCCATCTGATCAAGGACCTCGCCCACGACTTCGCAGACTGCATACTGGGCCCCAgcgaggaggagctggagaagggCAATGACCTCAGCTGCATCACCCCCAGCAGGGTGCCCACCCCCCTGGGCGCCTCCCACACCAACGCCTTCCACGTGTGGGACCAAGACGACGTCCAGATCCCCATCTCCCCGGTGGGGAGTCCCGAGCCCAGCCCCTCTCTCCTGCCCTCTTACATCCCTTCCTTCTTCCCCTCACTCAGCCCCACCTTCAGCCCTGCCCTGAGCCACACGCTGCCCCGCGAAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62240 lncRNA upstream 71937 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA upstream 512414 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 513644 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 598012 3356699 ~ 3359529 (+) True G49738
TU62082 lncRNA upstream 914946 3027978 ~ 3042595 (+) True G49636
TU62428 lncRNA downstream 2078 3963128 ~ 3964014 (+) True G49914
TU62458 lncRNA downstream 64051 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 73699 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 346776 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 501312 4462362 ~ 4468763 (+) True G50055
AMCG00008556 mRNA upstream 17628 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008552 mRNA upstream 96151 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008551 mRNA upstream 112921 3837133 ~ 3844620 (+) True AMCG00008551
AMCG00008550 mRNA upstream 122962 3823994 ~ 3834579 (+) True AMCG00008550
AMCG00008549 mRNA upstream 138365 3811585 ~ 3819176 (+) True AMCG00008549
AMCG00008560 mRNA downstream 48148 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008559 mRNA downstream 61475 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008569 mRNA downstream 136746 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008579 mRNA downstream 549940 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008580 mRNA downstream 601092 4562142 ~ 4572874 (+) False AMCG00008580
TU62012 other upstream 1068645 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1187497 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1746027 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1814231 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1851968 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 195038 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 201008 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 600941 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1634973 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1777491 5738541 ~ 5742750 (+) True G50243

Expression Profile