RNA id: AMCG00008557


Basic Information

Item Value
RNA id AMCG00008557
length 1900
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00008557
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3942168 ~ 3946340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCACGCATGCGCACGCAAATAACTGTTTACTCTGTTTAAACAttggatgttgttgttttcttatggAAAGTTCCTAGAAAATTACCTTAGAAGAGCAAAGAAGCAGCTCGGATACTGGTTTCTGCGTTTCTAGgtcaaaggtcatccAGAGGTGAGAGGAACACGCGTCATAGAGCTGTGACGGCCCAGCCCAGCAGGGAGGGAAATGGACACGTTTTTATTTGGGAAAAGTGCCTCTGACTCGCCCAGCACCTCAAAACAAAGTGATCAAACGCAAGGACAGGGATTGGATGAAGGATTTGGCACAGACAGTCACACCCCTGCAGAGGGTTCCACATTTATAAGCATGGATGAGGGTCTCAAGCAGCAGACCAGCGAGCCACCGGATTTTGAAGCCTCCAGCAGCGATGCGGAGCAGCCCCCTAATGAGCCCTCGATGTACGTCTCTCCTGTGGATTCGAGAATGGAAGAGATAGGGAAAAAAGCTCAGGACCTGATCGAAAAGATCTACGAGAACCGTAGAGTGGGTGAAGATTGTATGAGCAGCTTCCAGGACCAGCTTATGACGAAGGTGAAAGACTTATGTCGCCAGGTGAACGAGCACATGTTTGCAGTGTATGAGGAGAACAGCAAGCTGATAGAAGAGAAGCTGCAGGAGCTGTCAGAGGTCTTACAGAGGTGCAGCCTGTTGAATGCAGACCTCCAGAGAGCCAGCCAGACCCTGGTGGCCATCAACAAGGGCCTGTATGACCAGCCAGAGCTGTGACGTGCTCCCCAGGGCCTGCCGATTACAGCAGCACGTGTTTGGGAGAGGGCACAACCAATCTCCTTCTCCAGAGCTGAAGAAAAGCCCAATCTGACATCAGGAAGGGACCAGACAGGGGTCAGCACTGGTCTTACAGAGCAGGCAAACATCCAGACCAGTCGATTTCTCTTCCTTTTAAGACCATGTGCACAGGAAGACATGCTGTACGACTCTCTTTTGGTCATAGTTCTGTTATGTTCTTACAAGGTTACATTCAAGCTTTTGAGTTAGGCGTAACGAGCCCTCACTCTTCTGTAAACATTATTTCGTGAAACCTCTGTGGCTCGTTTTCCTTTCAACAAGGGAGgcagattataaaaataacatgttagcaggaggtttatttatttattgtattcccCCGTTACGAAAGGTGATGCTAAACAGACGGGGCTgagcacacaaataaataagtccATTCCTGCTACTGTTGCATATTCTGTATTGCCAAATTGGGAACTGCAGTGTGGCAGGAATATCAACAAGGCCGATCTGTTTGTCCTATGAGTTCAGTGTGgcatcattttttcatttgtcaaATAACCTTCGGCttaacctttctttaaaacGATGGCTACTttccatatttcattttttttttcttctcttctggTGAGTAGATTATTTCGTCTGTCTGTTTGTTGCTCCTAGATTtaattcactttgtttttttatttatattttatatatagatgaATGATTGCCTCTTCAGTTCTCTGAAAAGATGCGAGAACAAAAGACGCGTCTCATTCTAGGCCCAGTGCCAGCCGAAAAACTCGAAGGTAtccacatacaaatacaaagacaCGCTCTGTCTCGATACAGCCCGGTTTGAGCCACGAAGCTTGGCGTGACTCATCGTCTTGTATACAATTGAAACCAGGACAGATAAAGATTTATGTGTCagcattcaaatgttttctgtagaaaATGTGTTGTTCTGCTTGTTACAGTTCTTatctgaatatttttaaatcggTCGTTGAGTTGGGCACCACTCCAGCAGCTGTGCTTCAGATGATCAAAGTGTACATGTTTGAACGTGCCAATCTTCTCTGCTAATAAAAGCACGATGCACTGTTACAGTAGAATA

Function

GO: NA

KEGG:

id description
K19535 SYCE2; synaptonemal complex central element protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62322 lncRNA downstream 79062 3430814 ~ 3863106 (-) True AMCG00008554
TU62373 lncRNA downstream 132906 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 161064 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 206691 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 248907 3691380 ~ 3693261 (-) True G49858
TU62533 lncRNA upstream 215835 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 372443 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 873900 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 880714 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1662013 5608353 ~ 5610329 (-) False AMCG00008602
AMCG00008558 mRNA downstream 30084 3890918 ~ 3912084 (-) True AMCG00008558
AMCG00008554 mRNA downstream 70899 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008553 mRNA downstream 119753 3820015 ~ 3822415 (-) True AMCG00008553
AMCG00008547 mRNA downstream 165131 3769684 ~ 3777037 (-) False AMCG00008547
AMCG00008535 mRNA downstream 317076 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008563 mRNA upstream 23006 3969346 ~ 3980969 (-) True AMCG00008563
AMCG00008561 mRNA upstream 36436 3982776 ~ 3995553 (-) True AMCG00008561
AMCG00008562 mRNA upstream 51461 3997801 ~ 4017824 (-) True AMCG00008562
AMCG00008566 mRNA upstream 122748 4069088 ~ 4091769 (-) True AMCG00008566
AMCG00008567 mRNA upstream 158403 4104743 ~ 4108013 (-) True AMCG00008567
TU62371 other downstream 164814 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1033503 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1857162 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2061206 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2091886 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1802550 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1841410 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3001549 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3199285 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3954995 7901335 ~ 7902606 (-) True G50602

Expression Profile