RNA id: AMCG00008558


Basic Information

Item Value
RNA id AMCG00008558
length 5736
RNA type mRNA
GC content 0.46
exon number 19
gene id AMCG00008558
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3890918 ~ 3912084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGAGGAGGATGATAACTATTATGGAAAACATGgcGAGCCACAGAAGTATGACCCCACTTTTAAAGGCCCCATCCACAACAGgagctGCACAGATGTCATATGCTGCATTCTGTTCATCCTTGCCATCATTGGCTACTTTGTGGTTGGCATTGTGGCCTGGTCTCAGGGGGACCCCAGGAAGGTGATCTACCCAACCGACAGCAGAGGGCAGTTCTGTGGGCAGGCTGGCACCCCTCTAGAGAATAAGCCGTTCCTGTTTTACTTCAACATCATGAAGTGCGCCAGTCCCTTGGTCCTCTTGGAGTTCCAGTGTCCCACGACACAGatCTGTGTGGAGAAGTGTCCGGACCGCTTTCTGACTCTCCTGAAAGCCTTCTCCAACACCGAAAACATGAATTACTACAAGAGTTACTGCAAGGAGTTTGACATTTCTAAAGTGTTTAGCGCCCCTGAGATTCTCAGAGAGGGACTGTGTCCTGCCATGCTGACACCCAGCAAACCCTTCACCCGCCGGTGCTTCCCTGCCCTCCAGACAAAGAAGGGGACTGTGTCCGTGGGCAATGACACAGTCTTTGATGACGGCCGAGGCAAAATCCGCAACGTCACTGACCTATTGGATGGTGccaagaacgCCAATGTGGTCCTTCAGGCCCGCCAGGTGGCTATGAAGATCTTTGAGGACTACACGCAATCCTGGTACTGGATCATCATTGGACTGGTCATCGCCATGGTAGTCAGTCTGATCTTCATCATACTGCTGCGCTTCCTGGCCGGCATCATGGTCTGGATCATGATTGTCCTGGTCATCGCGATCATCGGATACGGCATCTTCCACTGCTACATGGAGTACGCGGCCTTGAAGAACAACCCCGGATCCGACGTCAGCATCAAAGACCTGGGCTTCCAGACTGATTTCTCCGTGTACCTGGAGCTCAGACAGACCTGGCTGGCCTTCATGATCATCTTGTGCATCTTGGAGGTGGTGATTATCTTGCTGCTCATCTTCCTGAGGAAGCGGATCTGCATCGCCATTGCACTGATCAAGGAGGCCAGCAACTTCCTGTCTACTTCTAACGTGGCCGTTTATAAAGTGTTTAACGAGACAGAGTGCAACTACACCAGGACTACCTGTGACCCTGCGACGTTTAACACGACCAACATCCGGGCCCATTGTCCCGACGCGCAGTGCCTGTTTGCCTTCTACGGCGGGGAGACCTACTACCACAAGTACCTCATCGCCCTGCAGTTCTACAACGTCTTCCTGTTCTTCTGGTGCGCAAACTTCGTCACCGCCTTGGGCCAGATGACCTTGGCGGGGGCCTTCGCTTCCTACTACTGGGCCTTCAAGAAGCCTGACGACATGCCAGCTTTCCCAGTCTTCTCCTCTCTGGGCCGTGCTCTCAGGTACCACACCGGCTCCCTGGCCTTTGGGTCTCTCATTCTGTCCATCATCCAGGTTATCCGTGTCCTGCTGGAATACCTGGACCACAAACTCCAAGGCGCCAACAACAAGTTTGCCAAATTCCTGCTGTGCTGCTTGAAGTGCTGTTTCTGGTGCCTGGAGAAATTCATCAAGTTCCTGAACCGGAATGCCTACATCATGgtTGCAATTTATGGTAAAAACTTCTGTGCCTCAGCCCGAAACGCGTTCTTCCTTCTCATGAGAAACATCGTGAGAATTAAAGGAATCGAGGGCACGTCACCGAACCTCAACTACTACTGGGTTCCCATCCTGGTGAGTGAAGACTTGGAACGCAACGATGGGTCCCCAGAGAGGCCGTACTACATGTCACCGGAGCTCCACCACATCCTGTTCCAGGAGGAGCCCGAGGAGAAGGAAGAAACGCAAGAGGAGAAACCAGAGGAGATCCAGGAGTAGactggggtggggtggggtggtggaACAGCTCCCCTAGTGGCCCGGACATGGTATTCTTAAGAAAAGGACGGcagataagatttttttttttttcttgatggaAATTCTCTAAGATCGTTACCAAAGCTCGCATGGAAGGGTCCGGCGATAAATTGAAAGTTTTAATAGAGTTTGTATGGGGAAGCTGGAAGGAGTAACCCCATTTGCCTTAAGGATTGTATAATAGATCGGTTTAATCCGCCTGTTCTGCACTCACTACTCAAATATTGTTGGAATTGTTACCACATACTGAAATCCCCCCGCCATCCTACCATATGTTTAAATGGAAAGCAGAAGCAAAGTTGTCCTAGCCCAACACTAAAAACTCTTCCACTACGTGCTCAAAGACTGTTGATTTTATTCTCTCTAGGGATGTACAGAGGAGTCTTGTGTACATACAACCCAGGACTGACCACGTGCCTCGTCTTTTAGTGTCAAAATTGTGTAATCTCTGTGTATCGATATATGTAAAAGCTACAACCGCTACTCCTATGACTAATGCCATTGTTACTAAaacccagaaggattgtgggaCAATGCTGTTTAATTTTCTCTGGGTTTCAAATTCAGATTCCCACATGTCActtgtatgcattttacaagGATTGACGTTTAAAATCTACACCATCCATGTCTCAGTTAGTCAGCAGCAATCTCTGTACTTTATGGTCGTTTTCTCATCATATTATGTTGTTGTAGACACCAGATGGAATCTTTTTCAAAATGACAGTGCTTCCATTTCAAAGCCCTTTGTTATCAGTTTGTAACATCATTATAATCCCTTTAATTACAGCTATAATGTTTTCAGTGAGTGGATGCAGTTGCTGACTAGCTGCAGATTTGTTCTTGACACAGTGCCAGTCGTGATTTTATCTTTTAACAGTACTTTTGTAAATATAAGATGCCTACTGATGCCTTGAATTTATGTTTTGGTTGTCAATAGTTTTCCTCAAAAACTACAAAAGGGATTCGGTGTTTTTGCCCAAGTAGCATAGCAAATTCTTAGATAGTAGTCTGGGAGTGaatggaatacttttttcctccccaACGCCTGGATGTTTACAGCCAATGTAAAAGAACAACCATTttgttaatatgtataatattgtatttattggaaAGGTATAGGATCTCTTTGTCGTTTTAAAAGTTTGCCTCGTATACACAAACTGCGCCTTTTGCGCTGTTCCCTACAACTCCAATCTCAATCCCAGTCATAAAGAAGTGCTGCAGTAACTCCTTGGTTTTGTCTTTTAccttattaatttgtttatataatatatatatatatatattttttttttttcttggttcaTATCTTTCATGCAATATACACTTTTGAAGGCTTTAGAAAATTATTCAGTTAATCGGACCAATTGCGTTACTGGAGTTGGGTGGGAACTAAAGCcaaaactttttaaatactttttttaaagcaccTTTTCTGCCTTGGAATGTGCCAGACTGCCACCTGGTGTGTGTGCCGCAGTCCTGCAGCCGTTTAAATTTTGCAGCCTCTTCACTGTGCCCTCGGTGCTCCTTGTCTGTCTCCTCTGACTgcatgctgtactgtactgaccTACCAGTGCGCTCTTTATTAAAGCCAACGGTCTTTCTACTCTGTCTCTCGACTTTGCTGGTCTTTCTCAACTCGGGGGAAGTGAGGTggtttcttgtatttatttcagaagtCGGGACTAGAAATGGATTCTCTCTGTACAGACCGTGAAATGTTGTTGTGTACTTTTTGTTGTTATATGGAAGTGTCTACTGGTAAGAAATGGTTTCCCATGATGCCCGAGAGCAGGTCTGTTGGTAATCACACTCCAATGGCGTTTATTGTGTCGGAAGAAAACAAGACTCTAGGCCTTCTGCAATTGTGACGAAGGAGGGCCAGACAGTCCTTTCTCACAGTGAAGTACCATTTTAAAAACCTTGGTTGTACTAGATTGAACTGATTTCTCTCCTCATGTGTTCCCTGCTGTCTCTTCTTCTTTCCCCCATTTCTTTACTtggctctctccctctcgcccCCTCCTGCATCTGGGTCTCCCTCTTGCATTCTCGCTCTCCTCCCTATTGcaatttctctctgtctctcgcagTGGAGGACCTGGAGCGCAACGACGGCTCCCAGGAGCGGCCCTACTTCATGCCCGAGGCGCTGCTCAAGATCCTCCAGAAGAAGAATGAAGGGAAAGCTGCGAAATAGCCCCCTGCTCCTTGGCTGGGCTCCAGTCTGCATATTACTGGTGGAGGAGCTGGTGTGAAGGCCTATGAGTCTGGAAGTGgttgccaattttttttttttttttttttttaaatctgtgacaTCCAGAAACCAAACCACCTCGGAGGTTTAACGTCTAACTCTGTCCCAACACGGGTTTGTAAGGTTCTGTGACAACCAAAACCACTGGCGCCCACATTTTGCTACCCCACCTCTCCCCGTTTCTTAACCAGTCCTGCCGGGGTATTATCCCCCAATCGCTTGCCTTTTTCTGTTAAAgctcacgtgtgtgtgtgtgtggcaaatGAAGTAAAGTCCTGCGTGTGGTAAGATGGGGTCTGTAGGCTTTATACAGCAGGTATTACCACTTATTGTAGAATTTTGCTGTACTATTAACCGTGCAGAGGCTTTTGAAGAAATATAAGTAATCGTTACTGCACATTTACACAGCTGCTTCAATTGAATCCTTCATCGTACTCATTTTAGCTgcctttttttgggggggggcttggttatgttgttttgttttagaatcACAGACTAGATGATCAGGAGCACATTTTCATGTCCTGGGTATTAAGTGATTTGGCGTATTGTGGGAGCCTGACATACCGGGAATGTCTAAAACGCATCACTTTTGTGGAGAAAGACAGTATTCTTAGGATCTCCTAAATTAAGTGGTTAACTCttatttactcatttaaaaaacatgaaattacaGTTTGAATCACAGAGGTTTGATTTTaggttttttatatatacctGTGCGTTTAATATTGGTTCAGATGTTCCTATTCGTCAGGTGTCTCAATATTTAAGAGCCTCAATCTATTTGTCCCCGATCCCCtcttccatttccatttatgtAATCATGCAATCGTGTATCCATCCAAGAGCCGGTGTACAGCTAATCACACAGTCCTGCCTGCTAGAAAGCACAGTTCAGGTTATCCGGTATTATGCCCTTTTATTTCTAGAGATTCATGTAACTGGTGCGGCTCGGGTCTCCATTACTCTACATTCGTATGGTCGAGACCTTTTGTGGGGCGTATCTAGTTTGCAAAGGCCTTCTGAGGACGTTCGGGTCGTTCAGCCTTACTCACATGTCTTTGGGTAGCCTCTCCCTCCGCTGGATCGCCGACACACTCCATGATGGTAGAGTTTTAATTGCTCACATATACATAGGCTAAGTGCCCAGAAAATTTACTGGGTTTAGATCAAGGAAGGGAGCCAGTTTGCTTTGTTCAGCTCCAGAAATGGGATTGCGTATTGTGGGAAGTAGAAGAACGATGTGGAGCAGGGTGTGAGGTTACCTGGCAAATGTCAGCCtgttacatattttctttttctttttaatgtgtgtgggaaggggggggggagctgtatatttatgtacatgCCTGCTTCTACCAAAGCTTAGGAAACCTATGGTTTCTAGGCTCAGCCTGCTGTTGGAATTGTAGCCACATGGAGTTGAGTCCTGTGCTCCACAGGTCCTTGAGTGGTGAGTTTGCATGTGGGAAACCATAATATTGTaccattcatttgttttaaatattcaataataaagTTTTCTATGTACa

Function

GO: NA

KEGG:

id description
K15377 SLC44A2_4_5; solute carrier family 44 (choline transporter-like protein), member 2/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62322 lncRNA downstream 27812 3430814 ~ 3863106 (-) True AMCG00008554
TU62373 lncRNA downstream 81656 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 109814 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 155441 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 197657 3691380 ~ 3693261 (-) True G49858
TU62533 lncRNA upstream 250091 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 406699 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 908156 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 914970 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1696269 5608353 ~ 5610329 (-) False AMCG00008602
AMCG00008554 mRNA downstream 19649 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008553 mRNA downstream 68503 3820015 ~ 3822415 (-) True AMCG00008553
AMCG00008547 mRNA downstream 113881 3769684 ~ 3777037 (-) False AMCG00008547
AMCG00008535 mRNA downstream 265826 3618649 ~ 3625092 (-) True AMCG00008535
AMCG00008536 mRNA downstream 279654 3600768 ~ 3611264 (-) True AMCG00008536
AMCG00008557 mRNA upstream 30084 3942168 ~ 3946340 (-) True AMCG00008557
AMCG00008563 mRNA upstream 57262 3969346 ~ 3980969 (-) True AMCG00008563
AMCG00008561 mRNA upstream 70692 3982776 ~ 3995553 (-) True AMCG00008561
AMCG00008562 mRNA upstream 85717 3997801 ~ 4017824 (-) True AMCG00008562
AMCG00008566 mRNA upstream 157004 4069088 ~ 4091769 (-) True AMCG00008566
TU62371 other downstream 113564 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 982253 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1805912 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2009956 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2040636 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1836806 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1875666 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 3035805 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3233541 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3989251 7901335 ~ 7902606 (-) True G50602

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000113_02387553_02403367.mRNA True 1588 mRNA 0.46 15 CI01000113 2387553 ~ 2403367 (+)