RNA id: AMCG00008559



Basic Information


Item Value
RNA id AMCG00008559
length 969
RNA type mRNA
GC content 0.53
exon number 1
gene id AMCG00008559
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4022525 ~ 4023493 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGAATggagaaaaaaaggttttgcGTGTTCCTGTTGATTCTCATATGCTGTTTAGCAATCTACTACATTACTATGCACAAGAACCCCAGGAAATCAGAAAAGCAGCTTGTGGTACCCGCTCCAGTGGTAGTTGTCAAGTACCCCCTCAAGCACACTTACATCCTGAACGAGCCAGACAAGTGCAGAAGGAGAACCCCCTTCCTGGTTCTCATGGTCCCAGTGGCTCCACATGAGCGCCCAGCCAGAGACGCCATCAGAAAGACCTGGGGCCAGGAGAACTCTGTCCCAGGAGTGGACATTCTACGGATCTTCGTACTGGGGCTGCCCTCTGGGGACCAAGCCACTCAGATCCAGGTggagctggagagggagagcCAGGAGCACCATGACATCATCCAGAAGGACTTCCTGGACAGCTACCGCAACCTGACCATCAAGACCATGGCGATCATGGACTGGCTGGTCTCCTACTGCCTGAGGGCTTCCTATGCCATGAAGATTGACACAGACATGTTCCTCAATGTGGACTACCTGGTCAACAAGCTCCTGGACCCTAGCGCGGCCCACCCCAAGAGGAACTACATCACAGGGCTGGTACTGGAGAATACCGCAGTGCACAGAAACAAAGGCAGCAAGTTCTACATGCCAAAGGAGGTCTTTCCCAGTGACACTTATCCCATCTACGTCTCTGGGGTGGGCTACGTTTTTTCCATTGACCTGGCCTCCAAGCTGCTCTCTACATCTTGGTTGGTGGAACCTGTGTTCCTGGAGGATGTCTACGTGGGGCTGTGTCTGCGCCAACTGGGGATCAGGCCAGTATCCCTACCACAGCAGGGTCTGTTCTCCTTCGATTTCATTCCCTACTCAAAGTGTCGCTACTCCCAGCTCGTCGCAACTACTGGGATACATCCAGAGCAGCTGTTGCAAATGTGGGAGGACTTTACACATGGAGAGCATTCATGTTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62428 lncRNA upstream 58511 3963128 ~ 3964014 (+) True G49914
TU62240 lncRNA upstream 136921 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA upstream 577398 3444002 ~ 3445127 (+) True G49753
TU62242 lncRNA upstream 578628 3414181 ~ 3443897 (+) True G49754
TU62224 lncRNA upstream 662996 3356699 ~ 3359529 (+) True G49738
TU62458 lncRNA downstream 1608 4025101 ~ 4026246 (+) True G49938
TU62464 lncRNA downstream 11256 4034749 ~ 4035052 (+) True G49944
TU62565 lncRNA downstream 284333 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 438869 4462362 ~ 4468763 (+) True G50055
TU62630 lncRNA downstream 464506 4487999 ~ 4488238 (+) True G50061
AMCG00008560 mRNA upstream 12380 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008555 mRNA upstream 61475 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008556 mRNA upstream 82612 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008552 mRNA upstream 161135 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008551 mRNA upstream 177905 3837133 ~ 3844620 (+) True AMCG00008551
AMCG00008569 mRNA downstream 74303 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008579 mRNA downstream 487497 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008580 mRNA downstream 538649 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008588 mRNA downstream 776961 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008587 mRNA downstream 800634 4824127 ~ 4835656 (+) True AMCG00008587
TU62012 other upstream 1133629 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1252481 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1811011 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1879215 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1916952 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 132595 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 138565 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 538498 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1572530 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1715048 5738541 ~ 5742750 (+) True G50243

Expression Profile