RNA id: AMCG00008562


Basic Information

Item Value
RNA id AMCG00008562
length 3391
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00008562
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 3997801 ~ 4017824 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagaaaatgtcaagCTTATGAAGAATGTAATGAAGCAAGTGACTCCCGGCGCCAAGTTGACCGAAATGATCACATATCACCAGCCCTGTGATGTAGTTCTTCTTGGGGTAGAGGGCGCTAGGTTGCAAGAGCTTGTTGACCAGGTAGTCCACGTTGAGGAACATGTCTGTGTCAATCTTCATGGCATAGGAAGCTCCTGGGCAGTAGGAGGCCAGCCAGTCCAGGATTGCCATGGTCTTGATGGTCAGGTTGCGGTAGCTGTCCAGGAAGTCCTTCTGGATGATGTCATGGTGCTCCTGgctctccctctccagctccGCCTGGATCTGTGGGGCTCGGTCCCCAGAGGGCAGCCCCAGCGCAAAGATCCGCAGGATGACCACCCCTGGAACGTAGTTCTCCTGGCCCCAGGTCTTTCTGATGGCGTCTCTGACTGGGCGCTCATGTGGAGCCACTGGGATCATGAGCACCAGGAAAGGGATTCTCCTGATGCACTTGTCTGGCTCGTTCAAGACATAGCTGTAGTTGTGCGGTCTGTGAACCTGCCCCTTTTTGCTGATGCAGATGTAAAGAGTACCCTAACAGGGAAAATGAAGAAGTCGGTGAACCTGAACCACAAGATTATTCTGCCACTCCTGTGCGCTGTGatgtctctctccttctgtgtGTCCCTGACCTGGAGAATCTTAGGAATGCTCTTCAACAAACCTGTCCCCATGGAGAATTACACCATCGCCTACCCGCACAACTACACCTATGTGCTGAATGAGCCGGACAAGTGCAGAGGGAGCGCCCCCTTCCTGGTGCTCATGATCCCGGTGGCTCCACACGACCGCCCAGCTAGAGATGCCATCAGAGAGACCTGGGGCCAGGAGAACTGTGTCCCAGGGGTGGCCATCCTGCGGATCTTTGTGCTGGGGCTGTCCTGGGGGCATCAAGCCTCCAAGATCCAGGCGGAGCTGGGGAGGGAGAGCCGGGAGCACCGCGATATCATCCAGAAGGACTTCCTGGACAGCTACCGCAACCTGACCATCAAGACCATGGTGATGCTAGACTGGCTGGCCACTTACTGCCCAAGGGCTTCGTACACCATGAAAATCGACACGGACATGTTCCTCAACGTGGACAACTTGGTCAACAAGCTCCTGGACCCTAGCGCCCTCCACCTCAAGCAGGACTACATCACAGGGCCGGTGATTGGCTATGGCATCATCCGGAGAGATCAGGAGTCCAAGTGGTACATGCCCTTTGAGGTATTTGGAGGAGTTTTCTACCCTCCATATATTTCAGGTATCGGATACGTCTTCTCAGTGGATTTAGTGCCCAAGATTTTGCGGATGTCCAAATTCATCCGTCCTGTTTTCCTGGAGGATGTGTACATTGGTATGTGTTTGCAGGAGCTCGGAGTCAAACTCACCTATGCTGCTGATTCCCGCTACTTCCCCCGTTTCTCAGTCTCTTACAACCCCTGCTCCTTCAGCCAGCTCATCTCCACCACCCTGGCCCACCCCCACCAGCTCCCCGAAGTCTGGCATGACTTTCAAAGAACCAAATTCGCCTGCTGACATCAGGGCTTGAGCTGTTGCTATTCACACTGTGAAGCAAAAGGGCACTTTCACAAGCATGGTGGGACAGTATGTGGGAGCTTTTCTTTTGAACATCAGAGTATTGCAGCTCTTCCTGTTTATACTGGGGCTGGATTGTTATCATGACCTAGGGTGGAGATTGAAATGTTGCCAGAATTGGCTACCAGTATCGCAAAGTGCCTCAAGCGCTAGATatgaaatcataatttaaaaaaaaaatctcttgtATATATGAAGCCAAATTAATCTCGCAGTTGTTCAAGACAAATTAGTATATTGTGTCCACAATTGAAACTTGCAGCTTGGTTAATTAATTGCTTCAATTGAAGCAGTGTTGCTCACTCTGTATTTGCTGAATTTGGATTCAGTCCAGTATAATTATGGGTCAGATCATAGTTTAACTGAATAAAGGAAGCCCGGGGCATGTAAGCTGCTGGCAATCTCTCTAAAGACCCTTGTTGATTTCTAAACTGTGTTCTGTATGCTACAACATGACATGCTCTGCACTGGTGTGACATAAATACTACAGTATTTataaagtacagtatttaaaaaaaaaaaaaaaaaaaatggaaaaaatagtATGTGTTCAGAGAAATGTTTAGAAAATCCACATTCATCCATGTGGTGGACGTATTGTAAAATCGCaagtgtctgtatgtgtgtttatttaaatatgaatgatatgtaaatacattggcTTCTGTGGTGCTGGTGCTTCACAGAAAGTCCATAAGTATTGcccaaatacattattttgcacaCACTTTCTTCTAGTTATACCAAAGGGAGACCTTCAGGCCAGAGACAATGCAGACAATGCCAAGTACAAAAGGGAGCTGGCACAAACATCTGACAATttcaattaagtgttttttttcccctctgtgaaTTTATGACCATTGATATTAaggatgtattttgtgtattataaGTGGAATGAGCTGATGTTTGTAAAATGGGTACTTTTGTGTTGGGATTTGGTTCCTGTATGTGTTTTGTAGACTAGTTTCAACTCCGTATTTTGCAAGTGTCAAAATATCCAAAGAAAAACTTACCATATTCAAAGGGATGCTGAAATTGCACACCAAATAAGTATTGGCATGACTGTAATGTATATTCTTAAGCCTTCACGCTTTGCGACATACTATGGGTCTCCTGGTATGGTATAAACAGGTGAACTATCACAATATTATCATGTTACCCTGTAAAATAAGTGTATGAAATCAGCATCTTTGTAAAGAACATAAAAGCTGTCATTAACTAAGGTATGATttctttgtaattttatttattcaaaattgtTGGTTTTATATCTGCATGTAGACTAGAGCTGGATTCAAGTCAAAACATTTTGAGTCCAAGTCAATTCCGACTTCCCAAAAGCTAGTTCATTCTCCAGCTGAACAAGTCTAATCCAATCTGAAGTGAGTCCAGAGAAAGAAGTATATCCTATACAGTATGTGTAATATGTTGTCCCACTGAACAGATCTGAATTGACATACATTTGCGTTATTTCTGTGAATTGTACAACACAGGTTGCagatcaaaagaaaaagattaaccGTAAACTAATCATATCGGCTGGTTTGAAACTAAATCAAAAgtagattttatttcagttaaagacTCTTTTGAGGCACCTAAGAATGACAAGTGCACAAAGAATGTGGTTAGTCCTGTCATTCCCCTAAAGAAAAACTCCTTCAATGGGCTCTTCATGctaatacacatatataagtaGCCGATACTATACCAgcttgtaacaaaacaaaatgtgtttgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62322 lncRNA downstream 134695 3430814 ~ 3863106 (-) True AMCG00008554
TU62373 lncRNA downstream 188539 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 216697 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 262324 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 304540 3691380 ~ 3693261 (-) True G49858
TU62533 lncRNA upstream 144351 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 300959 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 802416 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 809230 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1590529 5608353 ~ 5610329 (-) False AMCG00008602
AMCG00008561 mRNA downstream 2248 3982776 ~ 3995553 (-) True AMCG00008561
AMCG00008563 mRNA downstream 16832 3969346 ~ 3980969 (-) True AMCG00008563
AMCG00008557 mRNA downstream 51461 3942168 ~ 3946340 (-) True AMCG00008557
AMCG00008558 mRNA downstream 85717 3890918 ~ 3912084 (-) True AMCG00008558
AMCG00008554 mRNA downstream 126532 3861467 ~ 3871269 (-) False AMCG00008554
AMCG00008566 mRNA upstream 51264 4069088 ~ 4091769 (-) True AMCG00008566
AMCG00008567 mRNA upstream 86919 4104743 ~ 4108013 (-) True AMCG00008567
AMCG00008568 mRNA upstream 90195 4108019 ~ 4114644 (-) True AMCG00008568
AMCG00008565 mRNA upstream 118308 4136132 ~ 4137118 (-) True AMCG00008565
AMCG00008564 mRNA upstream 140798 4158622 ~ 4159596 (-) True AMCG00008564
TU62371 other downstream 220447 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1089136 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 1912795 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2116839 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2147519 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1731066 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1769926 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2930065 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3127801 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3883511 7901335 ~ 7902606 (-) True G50602

Expression Profile