RNA id: AMCG00008565


Basic Information

Item Value
RNA id AMCG00008565
length 987
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00008565
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4136132 ~ 4137118 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAAGAAGTTTTGCAGTGTCCTGTTGATTCTGCTATGTGGTTCAGCACTCTACTACGCCATATACAATATCTGCAGTAAATCAGAGAAGCAGTCTGTGGTGCCCATTCTAGAGTTCAACTATCCACTCAAGTATGCCTACATCCTGAATGAGCCGGACAAGTGCAGAGAGAGAACCCCCATCCTGGTGCTCATGATCCCCGTGGCTCCACACAACCGCCCAGTCAGAGACGCCATCAGAAAGACCTGGGGCCAGGAGAACTTTCTCCCGGGGGTGGAAATTCTCCGTATCTTCGTACTGGGGCTGCCCTCTGGAGACCAAGCCTCTCAGATCCAGGTggagctggagagggagagcCAGGAGCACCGTGACATCATCCAGAAGGACTTCCTGGACAGCTACCACAACCTGACCATCAAGACCATGGCGATCATGGACTGGCTGTCCTCCTACTGCCCAAGGGCTTCCTATGCCATGAAGATCGACACAGACCTATTCCTCAATGTGGACTACCTGGTCAACAAGCTCCTGGACCCCCACGCCCCTCACCCCAAGCAGGACTACATCATTGGGGGGATACTGGAGAATACCCCAGTAATCAGAAGCAAAGGCCACAAGTGGTACATGCCAAAGGAGGTCTTTCCCAATGACGTTTACCCCATCTACGTCTGCGGGATGGGATACATCTTCTCTGTTGACCTGGCCTCCAAGGTGCTCTATGCATCTCGGTTAGCGAAACCAGTGTTCATGGAGGATGTCTACGTGGGGCTGTGTCTGCAGCAGCTGGGGATCAGGCCTGTATACCCTCCAAAGCAGGGCCTGTTCGCCTACATTTTTGTTCCATACTCAAAGTGTCTCTTCTCCCAGCTCATTACTTCTATTGTTTATCAACCAGAGGATCTACTGCACATCTGGGAGGACTTCACACAAGTTGGCCAAGCATGTCCAGATGAAATGAGAGAAGTACAGAGCCAAAGACCATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62322 lncRNA downstream 273026 3430814 ~ 3863106 (-) True AMCG00008554
TU62373 lncRNA downstream 326870 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 355028 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 400655 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 442871 3691380 ~ 3693261 (-) True G49858
TU62533 lncRNA upstream 25057 4162175 ~ 4163650 (-) True G49984
TU62578 lncRNA upstream 181665 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 683122 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 689936 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1471235 5608353 ~ 5610329 (-) False AMCG00008602
AMCG00008568 mRNA downstream 21488 4108019 ~ 4114644 (-) True AMCG00008568
AMCG00008567 mRNA downstream 28119 4104743 ~ 4108013 (-) True AMCG00008567
AMCG00008566 mRNA downstream 44363 4069088 ~ 4091769 (-) True AMCG00008566
AMCG00008562 mRNA downstream 118308 3997801 ~ 4017824 (-) True AMCG00008562
AMCG00008561 mRNA downstream 140579 3982776 ~ 3995553 (-) True AMCG00008561
AMCG00008564 mRNA upstream 21504 4158622 ~ 4159596 (-) True AMCG00008564
AMCG00008571 mRNA upstream 27930 4165048 ~ 4174152 (-) True AMCG00008571
AMCG00008570 mRNA upstream 101466 4238584 ~ 4250756 (-) True AMCG00008570
AMCG00008573 mRNA upstream 142035 4279153 ~ 4280552 (-) True AMCG00008573
AMCG00008576 mRNA upstream 145601 4282719 ~ 4292278 (-) True AMCG00008576
TU62371 other downstream 358778 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1227467 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2051126 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2255170 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2285850 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1611772 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1650632 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2810771 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 3008507 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3764217 7901335 ~ 7902606 (-) True G50602

Expression Profile