RNA id: AMCG00008569


Basic Information

Item Value
RNA id AMCG00008569
length 338
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00008569
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4097796 ~ 4098156 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAACTCTCTTTTCTCAACCTTTTTGTATGAGGGACATACATGTTAAGGTCTTGACTCTGAGAATCACTGCTCTGCATGGAAACAATATCCAAATTTACTGCCAGTTTGACACCTCAGAGAGGAGTAGAGACATTTCtgttgaaatTGACCCAGAGCTCTCCAGATACCAAGACCACAGTTACACTGGAAGGACCAGGATGTTCTCTGATGCTGTTGCTAAGGGAAACACATCACTGGTTCTCTCCAATGTGCAGGTGACTGATGATGGAGAGTATATTTGTCTCGTAGTGATCAGGGATATTGCCAGAAGGGACACCTCACTAGTGTCAGTACTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62464 lncRNA upstream 62744 4034749 ~ 4035052 (+) True G49944
TU62458 lncRNA upstream 71550 4025101 ~ 4026246 (+) True G49938
TU62428 lncRNA upstream 133782 3963128 ~ 3964014 (+) True G49914
TU62240 lncRNA upstream 212192 3429897 ~ 3885604 (+) True AMCG00008526
TU62241 lncRNA upstream 652669 3444002 ~ 3445127 (+) True G49753
TU62565 lncRNA downstream 209670 4307826 ~ 4308836 (+) True G50011
TU62622 lncRNA downstream 364206 4462362 ~ 4468763 (+) True G50055
TU62630 lncRNA downstream 389843 4487999 ~ 4488238 (+) True G50061
TU62640 lncRNA downstream 417340 4515496 ~ 4527552 (+) True G50066
TU62666 lncRNA downstream 484746 4582902 ~ 4583205 (+) True G50086
AMCG00008559 mRNA upstream 74303 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008560 mRNA upstream 87651 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008555 mRNA upstream 136746 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008556 mRNA upstream 157883 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008552 mRNA upstream 236406 3856572 ~ 3861390 (+) True AMCG00008552
AMCG00008579 mRNA downstream 412834 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008580 mRNA downstream 463986 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008588 mRNA downstream 702298 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008587 mRNA downstream 725971 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008590 mRNA downstream 801289 4899445 ~ 4904073 (+) True AMCG00008590
TU62012 other upstream 1208900 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1327752 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 1886282 2209483 ~ 2211514 (+) True G49340
TU61627 other upstream 1954486 2127715 ~ 2143310 (+) True AMCG00008476
TU61588 other upstream 1992223 2091961 ~ 2105573 (+) False AMCG00008475
TU62528 other downstream 57932 4156088 ~ 4160062 (+) True G49980
TU62530 other downstream 63902 4162058 ~ 4165483 (+) True G49982
TU62655 other downstream 463835 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1497867 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1640385 5738541 ~ 5742750 (+) True G50243