RNA id: AMCG00008571


Basic Information

Item Value
RNA id AMCG00008571
length 1514
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00008571
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4165048 ~ 4174152 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGATGTAAAAGAGAGGTCTTTCATATGGATACGAATACAGTGACTAAACACATGAAGTTGTTTTGGTTGTAAAGAATGAAGAAATATATCGTTTCTGAGCCACATCTAAACggatttaaaattgattttttgttCTGCAGTTGGTTAATCTGGACACGCATCGAAGGGGAGCTTTAACGCGAAagaaggttttttttgtgtggttttttttttatatttaattggaCTTGCTACAGTTTTTCTCCGGCCTGTAAAGAGTGGATAGCagtttttatacacaaaaacGCCCACCAATGGGACCCCTGACCCGTGCAGCCCTGTGATGCTGGCTGTGAATCATAGCAATGCCTCCCTGGCCGCTGGTGTCGTGGCTCTCAATGAGAGCCGGGCCGGGGGGCTGTACAACTTCACGGCTGTGGACGAGAGATCGCTGGCCTCCCAGCCGCCACCCAAAGACCCCTCCGCCGCCGGGCTGTCCATGACCCTGGGAATCTTGTCCAACATCATCGCCCTGGTCATCCTAGTCAAGGCCTACGCCCGATTGCGGAGACGCTCCAAAGCCACCTTCCTGCTCTTCGCCAGCTCTCTAGTGGTGACCGATTTTGCTGGCCACGTCATCCCGGGGGCTCTGGTCCTGAGGTTGTACCTGGCAGCCCCCGGCTCCTATGACTCCTCGAACACCCTATGCCAGTTCCTTGGGGGATGTATGGTTTTCTTTGGACTATGCCCACTCTTCCTGGGCTGTGCCATGGCTGCAGAACGCTGCCTGGGTGTCACTAGGCCCCTACTACACTCCTCCTTGGTCACCTCCACACGGACCAAGCTCTCCCTCTCAGCCATCTGGCTGCTGGCCCTGTGCGTGGCCCTCCTGCCCTGCTTCCAGTTAGGCGCCTACTCCATGCAGTTCCCCAAAACATGGTGCTTCATCAAGGTCGACAACAACACCACCGCCTCCGATGTGGTCTTTGTGCTGCTTTTCTCCGGCTTGGGCTTGGCATCGCTGGGCATCTCGCTGGTCTGCAACACCATCAGCGGGCTCACCCTGGTTCTCGCCCGCCTCCGCAAGAGGACCTGCAACCGACGAGCCAAGTCCCATGACATTGAGATGGTGGTGCAGCTGGTGGGCATCATGGTCACCTCTTGTATCTGCTGGAGCCCCCTGCTGGTTGGCCTCCTGGAACCAAATCCTGGACCCCTGGGTGTATATCCTTCTCCGCAGGGCGGTGCTGAAGAAGATCTACAAGATCGCCAAGAGGCAGGGCGACTTCAAGGGCAGTACTTTTCGCAGGTGGGAGATCAGCTCCTTCCAAAGTTCAGAGAAGACCGCTATGAACAGGCTCTGAAGAAACACCAGCCACAGTCCAGGTCGTGGTTGGCCCTTCACCTTGAAGGAGAAGAGGTACCCTTCTTTGCCAAGTGGAACTGGAAGCCTCCTCAGGTCTACAGAGAGGCCTGGCTCCaaccctccctccttccctcctaCCACCATCCCATCAAAGCAAGCTTGCCTCAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62533 lncRNA downstream 1398 4162175 ~ 4163650 (-) True G49984
TU62322 lncRNA downstream 301942 3430814 ~ 3863106 (-) True AMCG00008554
TU62373 lncRNA downstream 355786 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 383944 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 429571 3720969 ~ 3735477 (-) True G49860
TU62578 lncRNA upstream 144631 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 646088 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 652902 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1434201 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 1486195 5660347 ~ 5786328 (-) False AMCG00008609
AMCG00008564 mRNA downstream 5452 4158622 ~ 4159596 (-) True AMCG00008564
AMCG00008565 mRNA downstream 27930 4136132 ~ 4137118 (-) True AMCG00008565
AMCG00008568 mRNA downstream 50404 4108019 ~ 4114644 (-) True AMCG00008568
AMCG00008567 mRNA downstream 57035 4104743 ~ 4108013 (-) True AMCG00008567
AMCG00008566 mRNA downstream 73279 4069088 ~ 4091769 (-) True AMCG00008566
AMCG00008570 mRNA upstream 64432 4238584 ~ 4250756 (-) True AMCG00008570
AMCG00008573 mRNA upstream 105001 4279153 ~ 4280552 (-) True AMCG00008573
AMCG00008576 mRNA upstream 108567 4282719 ~ 4292278 (-) True AMCG00008576
AMCG00008575 mRNA upstream 136842 4310994 ~ 4318313 (-) True AMCG00008575
AMCG00008577 mRNA upstream 155422 4329574 ~ 4332900 (-) True AMCG00008577
TU62371 other downstream 387694 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1256383 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2080042 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2284086 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2314766 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1574738 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1613598 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2773737 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2971473 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3727183 7901335 ~ 7902606 (-) True G50602

Expression Profile