RNA id: AMCG00008572


Basic Information

Item Value
RNA id AMCG00008572
length 1853
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00008572
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4353825 ~ 4362275 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggagagagacgaCAGGAAAGGAGAgacaaggagagaaagagagagaggtgttgTGCAATTTTGGAGCTAACGCTTTGTCAACCTGAACATGAAACCGGGATTGGAGTGCTATGCATTAGCCGACTCTGCCAGCACCAAATGGGGATGTCTGGTGcccattgagagagagaaagtcacGGATATGCTGAAGGACCTCAGAGCTATTGACTTGCACGATGGCCCATTGCGTGAGTGCCACCCATTGGAGTGCGACATGGCTTACCTCCATGTGAACCCAACCCCTAAGCCCATCCTTCTCTCCCCTAGCCTGGGCCCCAACTCCAGCTACATCTCCCCTGCACCCAGCTTCCTAAACAGAAGTCATCCAGGAAGCCTCTTTAATCTGGCCATGCCCTGCTTCAGCATGACCCTGGGCTGCATCTCCAACATCCTGGCTCTAACCATCCTCTTCAAGTCCTACTCCCGTTTCCGCCGACGCTCAAAAGCCACTTTCTTTCTCCTGGCCGGGGCACTCCTGCTGACTGATCTGTCTGGCCACATCATCCTTGGAGCCTTTGCTCTCCGGCTGTACCTGTCCATCCTATGGAAGGACTATGCTGATCACTCTGAAGTCTTCTGCCAGGTGTTTGGGGCCTGCATGGTGTTCTTCGGCCTGTGCCCCCTCTTCCTGGGCAGCGCCATGGCTGTGGAGCGCTGCGTGGGCGTCACCAGGCCCCTGCTTCACTCCACCACGATCACGGCCACCCACGCCAAGCTGGCAGTGGCCCTCCTCTTCTCCCTGTCCATCCTCCTGGCCACCCTGCCCTTAACCCAAGTGGGCAGCTACGTGCGCCAGTTCCCAGACACTTGGTGCTTCCTGCAGATCCATGATGGGCTCTCCAAAGCTAACCAGGGCCTCACCCTGGCCTTCACCAGCCTGGGCCTTGCCTCACTGGGCCTCTCCCTGCTCTGTAACTGCCTGAGCGGGATGGCTCTGCTGCAGGCCAGGCTGCGTGGACGATCCAAGGCCAAATCCAAGCCCAAGACCCCTGGAGTCCCTCAACGCAAATCTGCTCCATCCCATGATATTTGTATCTCCCTGTCGGTCAGCATGTCCTGGGGCTCCTCGGGGTATGACGTGCAGCAATACAAGAGGCTGGTGTTCATCGGGCTCCGACTGGCCTCTTGGAACCAGATCCTGGATCCCTGGGTGTACATCTTGCTGAGGCGGGCCGTGCTGAGGAGGCTGTATGGAGTAATGCAGCCCCACCGGCAGCTCACGCAGAGCTCtttcaggaccatggacagaGAGCCGCAGTCCTTCTCCCGGCACTGACCAGCACTGTCTCCGCATGCCTCTCTCCAACCCCCATCCCAACAATCCTCACCTGGATGTTTCATTGGGTACATATCGAGCTGCTGTTGCACCAACCGCAGGATCTGAGCTGTCAATGTGCGAAACACCGGAGGACCAACCGATTAGGTTTCAAGCACCTGAGACGTTCCCTCCATTCGCTTTAGCTATGaggctttcattttttaatggatAAAGGTTATCTAATATCACACTGAAGCACACATTGTGATACACTGAgacccaaaataataataaaaagttgtgttttttgtttttaaaacttatttCAGCAACCATACGAAACCAAACAGCAATGCAAGAACATTATTCTACTTCAGTCCTTAATAAGCTAcaaaaaatatctgtattgttaatgtaattatgGCTATTGTGCTGGTAAAGTTGTGTTTTCCTTCTTGGCAACGCGTCTTCTGGATTTGcaagatgtttttaaagtgtcatgaatgtaaattaactggttgaataaaataaaggctACAGAAGCATTACCGgtt

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0004957 prostaglandin E receptor activity molecular_function
GO:0004958 prostaglandin F receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62578 lncRNA downstream 31937 4318783 ~ 4321888 (-) True G50020
TU62533 lncRNA downstream 190175 4162175 ~ 4163650 (-) True G49984
TU62373 lncRNA downstream 544563 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 572721 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 618348 3720969 ~ 3735477 (-) True G49860
TU62708 lncRNA upstream 457965 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 464779 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1246078 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 1298072 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA upstream 1366775 5729050 ~ 5730043 (-) False AMCG00008609
AMCG00008574 mRNA downstream 735 4335677 ~ 4353090 (-) True AMCG00008574
AMCG00008577 mRNA downstream 20925 4329574 ~ 4332900 (-) True AMCG00008577
AMCG00008575 mRNA downstream 35512 4310994 ~ 4318313 (-) True AMCG00008575
AMCG00008576 mRNA downstream 61547 4282719 ~ 4292278 (-) True AMCG00008576
AMCG00008573 mRNA downstream 73273 4279153 ~ 4280552 (-) True AMCG00008573
AMCG00008578 mRNA upstream 15809 4378084 ~ 4400390 (-) True AMCG00008578
AMCG00008581 mRNA upstream 153497 4515772 ~ 4560370 (-) True AMCG00008581
AMCG00008586 mRNA upstream 254540 4616815 ~ 4621744 (-) True AMCG00008586
AMCG00008584 mRNA upstream 259577 4621852 ~ 4643616 (-) True AMCG00008584
AMCG00008585 mRNA upstream 300046 4662321 ~ 4673615 (-) True AMCG00008585
TU62371 other downstream 576471 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1445160 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2268819 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2472863 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2503543 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1386615 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1425475 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2585614 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2783350 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3539060 7901335 ~ 7902606 (-) True G50602

Expression Profile