RNA id: AMCG00008573


Basic Information

Item Value
RNA id AMCG00008573
length 693
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00008573
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4279153 ~ 4280552 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGACTTGTTCTTGGGGAAAGTTCTGGTCACAAACAACCGAGACAAGGATGAACTGGACACTGAGCGGGAAATTCTGCTCCGGCTGCAGAACCGGGTGGTGCTGCTGTTCTTCGGCTCCGCAGACTGTCCCAAGTGCCAAGACTTTGCCCCCACCCTGAAGGAGTTCTTTGTCCACCTGACTGACGAGTTCTACGTGGAGCGCTCGGCGCAGCTGGTCCTGCTGTACATCTCCATGGACGAGAGTGAAGACCAACAAAAAAAATTCCTCAAGGACATGCCCAAGCGGTGGTTGTTTCTGCCCTATGAGGACTTGTACAAGAAGGAGCTGGAAATGATGTTCAACGTGGAGGAGATCCCAACAGTGGTGGTACTGAGGCCCGACTGCACAGTCATCACCTCCAATGCGGTGGACGAGATCTCGCGCCTGGGGCCGGACTGCTTCCGCAACTGGCAGGAGGCCGCCGACATCATCGACCGCAGCTTCATGCTGGCAGAGGAATTTGACAACTTACATCTGCGCAGCATCACCGACCCCCTGCGCCGGCTCAAGTACAAGGTGgaggacaagaagaagaagaagaagaagaagaagaaaaagaagtcAAAGATGTGGggtgaagaggaggaagaggaagaggaggaggaagaggaggaaggggagggtAAAGGGCAGGAACCTTGGGGCTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62533 lncRNA downstream 115503 4162175 ~ 4163650 (-) True G49984
TU62373 lncRNA downstream 469891 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 498049 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 543676 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 585892 3691380 ~ 3693261 (-) True G49858
TU62578 lncRNA upstream 38231 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 539688 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 546502 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1327801 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 1379795 5660347 ~ 5786328 (-) False AMCG00008609
AMCG00008570 mRNA downstream 28397 4238584 ~ 4250756 (-) True AMCG00008570
AMCG00008571 mRNA downstream 105001 4165048 ~ 4174152 (-) True AMCG00008571
AMCG00008564 mRNA downstream 119557 4158622 ~ 4159596 (-) True AMCG00008564
AMCG00008565 mRNA downstream 142035 4136132 ~ 4137118 (-) True AMCG00008565
AMCG00008568 mRNA downstream 164509 4108019 ~ 4114644 (-) True AMCG00008568
AMCG00008576 mRNA upstream 2167 4282719 ~ 4292278 (-) True AMCG00008576
AMCG00008575 mRNA upstream 30442 4310994 ~ 4318313 (-) True AMCG00008575
AMCG00008577 mRNA upstream 49022 4329574 ~ 4332900 (-) True AMCG00008577
AMCG00008574 mRNA upstream 55125 4335677 ~ 4353090 (-) True AMCG00008574
AMCG00008572 mRNA upstream 73273 4353825 ~ 4362275 (-) True AMCG00008572
TU62371 other downstream 501799 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1370488 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2194147 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2398191 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2428871 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1468338 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1507198 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2667337 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2865073 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3620783 7901335 ~ 7902606 (-) True G50602

Expression Profile