RNA id: AMCG00008575


Basic Information

Item Value
RNA id AMCG00008575
length 2337
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00008575
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4310994 ~ 4318313 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGCATTACCAGGCAAGGAGGTAGTTGTGGAGGGGACCTTGCTGCAATACCAGGATGACAAATGGAGACAGCGCCACCTATCAGTCACAAAAGACTTTGCAGTGGAGAGTCGAGACTCCAAAGAGGTGTATCAGAAGGGCTGGGAGTGCAAAAGTATTCTAATCCTGACTGCCTGCCAGATCTGCACTTCTGTAGAGGAACACTGCCACCTACTGGACATCGCATGTCAGCACATCCCAGCTGGAACGGAAGGTCACCCTTCGGCCCGTGCCCAACGGACTTCCCGCTCTTTCTCCACCACCCATATCGTGCacccctgtgtttgtgtgccagATCTGCGGAAGGGCAGAGAGAGTGGCTCCGCGTTCTGCAGAGCGCCATACTTCACCACAGCACAGAGGAAGGAGAACTTTGAAACCCGGGCATTTGTGGAGGCTGTCCGATTTTACAGGCAGGAAAGGGGCAGCTACACCACTGGGGTCCTGATGATGGGGTCAGAAGAGGAGGTGCTGTCCAACGTTATTATGGAGGACATCTTGCCTGCGTTGTATGAGCAGCTCTTCCCCAGGCTGATTCAGTCAAAGGTCAGGAAGAGATATGGCTGGACACAGGATGTGTCTGGAGAGATAGATCAATGTGTAGCACGCTTGGCCGTTCCACTTCTGAGCACCACCTTCCAGGAGTTGGCCCCACCCCTCCATGCAGGATTGACCGGCGCCAGACAGCTATTCCTGGATGCCTGCGATGACATTATCAGAGCTGGTTGCACCGGCCAATCGCTGCAGGAGCTGATAAGCCCACTGAATATGCTCAGCAGAGGCTCGGCCCGGGCGACGGACTGCCTCGCCCTGTTGGAAAAgatggcaggcaggcaggcagggttGCAGGAAAGCTGGAGGATTGAGAGCAGTAGGTCGCTTATGCTCCAGGCCCAGAACTCAATTCAACAGCTGCTGGACAGTGCCGTGTTTACGTTCCGGCGTCTGCTGTCCCTGCAGTTCAACTACCGGCTAAGCCCAGCTCAATTCAACCGGGCCCTGCAGAATCAGCTGGATCATGACCTGACAGTGGTTCAGACACAGCTGGCACATAACACCCTCCTGGAAATCGTCCTGCCGGTGCTCCTGAAAGAGCTGGTGCCCAGATACAAGCTGGACCTGACCAAATATGAGCAGATGGTGTTCTCCGACTACAACAACCTCCTCCACATTGACAACATCTACCAGGGGGTGGTGAAGGAGGCACTGGTGCGAGAGATTAATGGCGTTCTGAAGGATGCTGGCAACATAGACGGGGGGTGGCCACCAGGCTCCTGGGATCCATTGGGAAGCCAGCTATCGGGCTCCGGCACCATGACGCCCAGCACTGGCTCCTACGAGAACGTGTGGATCGCCACGGAGGGAAGTGCTGTGGACGGACACCATAAAGCTCCAGCCCAAGAGTGTGGAGTGAAGATGGACGCAGGACAGTGCAAATGCGGGCACAACGGAGATGGAATGAGTTTTGTTCCGAAGGTGGGGCCGGTCGGCACGCCTGCCGGCCACGAGAGTAGACCGGACGGGGATTATATTTGCCTGGTTggtgctggagaaaactggaaCTAGTTTCTCACAAAGGCAGCTCCTGTGAACACCTTCCGGTGATGCCCCGTCCTCCTGAACTAACAGGACTGACAGATCAGCAAAACGTTCCCATATTTGACAACTTGCAACTTTGTATGGGAAAAATACCCAATCAAATGGTAGTCATTAAAAATCATCTGTTTGCAGAAGAATGTTAATTCTTATAGTCATAGATTAGATAATTGCTcatgtgtatttgaaataatgttgTTCACTTGtgcatattgtttttcttattttattttctctacagTAGGTCCCTATATGCAGTGATGTGTACAGGTTGTGTAACCCCCCCTCTGGACTGTCAGGAACTGCCCTAATTTCCTAACTGTGCCCCTACTCTAAACTGTTCTCTGCACGCTACTGcacagatgtatatatattcgcTTGCACTGAACACTCACTCATTGTAGCCTGTAGTACAGATTAGAGGTCATCATTGTAAATTCAGATAGTGAGTTCCAAGAGTTATTTACTAATTAACAGCATTACTTTAAccattattgttatcattagtATTACTAGTGGGATCGTTGTTTTATTGAGGCTTTGTCTGTGTATTTCACTTTGGTTTGTATTCTAGGATAATATCTTTATGCGGCCCAAAAGAATACTCTTCTGAAAGCGAGCACCTGCAGCTAACGCTCTCACAAATCTGCTATTGTTTACTTTCTCTTGtgcagaaattaataaaaacaaattatatcatCA

Function

GO: NA

KEGG:

id description
ko04640 Hematopoietic cell lineage
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62533 lncRNA downstream 147344 4162175 ~ 4163650 (-) True G49984
TU62373 lncRNA downstream 501732 3723229 ~ 3809262 (-) True G49863
TU62382 lncRNA downstream 529890 3779775 ~ 3781104 (-) True G49871
TU62368 lncRNA downstream 575517 3720969 ~ 3735477 (-) True G49860
TU62366 lncRNA downstream 617733 3691380 ~ 3693261 (-) True G49858
TU62578 lncRNA upstream 470 4318783 ~ 4321888 (-) True G50020
TU62708 lncRNA upstream 501927 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA upstream 508741 4827054 ~ 4829621 (-) False G50126
TU62815 lncRNA upstream 1290040 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 1342034 5660347 ~ 5786328 (-) False AMCG00008609
AMCG00008576 mRNA downstream 18716 4282719 ~ 4292278 (-) True AMCG00008576
AMCG00008573 mRNA downstream 30442 4279153 ~ 4280552 (-) True AMCG00008573
AMCG00008570 mRNA downstream 60238 4238584 ~ 4250756 (-) True AMCG00008570
AMCG00008571 mRNA downstream 136842 4165048 ~ 4174152 (-) True AMCG00008571
AMCG00008564 mRNA downstream 151398 4158622 ~ 4159596 (-) True AMCG00008564
AMCG00008577 mRNA upstream 11261 4329574 ~ 4332900 (-) True AMCG00008577
AMCG00008574 mRNA upstream 17364 4335677 ~ 4353090 (-) True AMCG00008574
AMCG00008572 mRNA upstream 35512 4353825 ~ 4362275 (-) True AMCG00008572
AMCG00008578 mRNA upstream 59771 4378084 ~ 4400390 (-) True AMCG00008578
AMCG00008581 mRNA upstream 197459 4515772 ~ 4560370 (-) True AMCG00008581
TU62371 other downstream 533640 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1402329 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2225988 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2430032 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 2460712 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 1430577 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 1469437 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2629576 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2827312 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3583022 7901335 ~ 7902606 (-) True G50602

Expression Profile