RNA id: AMCG00008579



Basic Information


Item Value
RNA id AMCG00008579
length 1071
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00008579
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4510990 ~ 4512060 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATGGCAAACGCAAATTCTTTCAGAGCTGTTTCCTTAAAGTGCTGTTGGTGACCTTTCTGTGGCTTTTGTTGCTGAGCTATTTCTCAGAGAAGAAATCGTGGCTGTACAACTTAATCCTAAAATACTGGGGGCATAAACAAGTTGCAGAACCCCCCTTGTTAAACATTACAACCCAGAGACCGCTCAAATATGATCCCCACTCACAGCATGGGCCCTTCGATATTGCTTATCCATACAACTACGCTTACGTCCTCAATGAGCCGTACAAGTGCGTGGCCAGGACTCCATTCTTGGTGCTCATGGTCCCAGTGGCTCCACATAACCGTGAGGCCAGAGACATCATCAGACAGACCTGGGGGAACGAGAGTTTGATCGCAGGGGTAGCTATTGTCCGGATCTTTGCGCTGGGGTTGCCCTCTGGGGACAGAGCCCCTCAGATCCAGGCAGAGCTGAAAAAGGAGAGTCAGGAGCACCATGACATCATCCAGAAGGACTTCCTGGACAGCTACCGCAACCTGACCATTAAGACCATGGCGATCCTGGACTGGCTGGTCTCCTACTGCCCGGGAGCTTCCTATGCCATGAAGATCGACACAGACACGTTCCTCAATGTGGACAACCTGGTCAACAAGCTCCTGGATCCTcatgccccccaccccaagcAGGACTACATCACAGGGGTAGTCATAGTGAATGGAGAAGCTCGCAGGGACACAGGGTCAAAGTGGTATATGCCCTTTGAGGTGTATCCCAAGAGTACGTATCCTCTGTACGTCTCTGGGATTGGCTATGTCTTTTCCCTTGACTTGGCCAAGAAGGTCCTGAAAGTATCCAAGTATGTCAAGCCCTTGTTTTTAGAGGACGTGTATGTGGGCATGTGCTTGGAGAAGCTGGACATTAAGCCAACCTACCCACCAAGCGCATCCCTCTTCAACCTCTACTCCTTCCCCTATGACTACTGCCGCTTCTCCAAAATCATTACTGTGACTGATATCCCCATCATGGAACTGGTGAAGTTCTGGAAAGACTTCCAGGTGCCTGGCCATCTCTGTGAGGGTAAGGAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62630 lncRNA upstream 22752 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 42227 4462362 ~ 4468763 (+) True G50055
TU62565 lncRNA upstream 202154 4307826 ~ 4308836 (+) True G50011
TU62464 lncRNA upstream 475938 4034749 ~ 4035052 (+) True G49944
TU62458 lncRNA upstream 484744 4025101 ~ 4026246 (+) True G49938
TU62640 lncRNA downstream 3436 4515496 ~ 4527552 (+) True G50066
TU62666 lncRNA downstream 70842 4582902 ~ 4583205 (+) True G50086
TU62727 lncRNA downstream 404943 4917003 ~ 4917257 (+) True G50142
TU62739 lncRNA downstream 457949 4970009 ~ 4970248 (+) True G50153
TU62769 lncRNA downstream 637408 5149468 ~ 5149857 (+) True G50180
AMCG00008569 mRNA upstream 412834 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008559 mRNA upstream 487497 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008560 mRNA upstream 500845 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008555 mRNA upstream 549940 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008556 mRNA upstream 571077 3934002 ~ 3939913 (+) True AMCG00008556
AMCG00008580 mRNA downstream 50082 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008588 mRNA downstream 288394 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008587 mRNA downstream 312067 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008590 mRNA downstream 387385 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008593 mRNA downstream 530694 5042754 ~ 5055756 (+) True AMCG00008593
TU62530 other upstream 345507 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 350928 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 1622094 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1740946 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 2299476 2209483 ~ 2211514 (+) True G49340
TU62655 other downstream 49931 4561991 ~ 4572734 (+) True AMCG00008580
TU62810 other downstream 1083963 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1226481 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 2445551 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 3421769 7933829 ~ 7939771 (+) True G50583

Expression Profile