RNA id: TU62655



Basic Information


Item Value
RNA id TU62655
length 797
RNA type TUCP
GC content 0.51
exon number 7
gene id AMCG00008580
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4561991 ~ 4572874 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTGAATGGAAGATTAACGCATTTGTTATCATGGATTAAAAGACACATCTAAAGCAAGGGGTAAATATGAGATTCTgactttaaaatactgtattctgGGGTTGTCTTTCAGAGCTGTTGATGGACTGGTCTCCCAAACAAGGCGTTGTAGAATGGGACAGAGCACTTCTGGACAAGAGTCGGATGAGGATAGGCGAATCAAGACCTTTGTGGAGGACCAACTACAAACCAGCATGaTGGTGGGGGTGGTTATCGGTGCTGGCGTCTCGATCATCTTCATCGCCATCCTCATCTTCTTCGTCCTGCGCCGGATCCAGCTGAGGAATATCCAGGCTCAGGAAACCCCTAAATACCGCTTCCGCAAGAGGGACAAGGTCATGTTCTATGGACGCAAGATTATGCGCAAGGTCTCTCAGTCCACCTCCTCTCTTGTGGGGACCACCTCGTCACGCCCGCGCTTAAAAAAGAAGCAGAAGATGCTAAATATCGCCAAAAAAATCTTGCGCTTCAAGAAGGAGGTGCCCACGCTGCAGATGAAGGAGCCGCCACCCTCAGTGCTGGAGGCAGATCTGACAGAATTCGATGTGGCCAACTCCCACCTGCCCTCCGAAGTCCTCTACATGCTGAAAAACGTCAGggTGCTGGGCCACTTTGAGAAGCCTCTGTTCCTGGAGCTGTGCAAGCACATGGTGTTCTTGCAgttccagcagggggagtaCGTCTTTAGACCGGGACAGCCTGACAGCAGTATATATGTGGTCCAAGATGGCAAGCTGGAGCTCTGCCTCACTGGGCAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62640 lncRNA upstream 34439 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 73753 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 93228 4462362 ~ 4468763 (+) True G50055
TU62565 lncRNA upstream 253155 4307826 ~ 4308836 (+) True G50011
TU62464 lncRNA upstream 526939 4034749 ~ 4035052 (+) True G49944
TU62666 lncRNA downstream 10168 4582902 ~ 4583205 (+) True G50086
TU62727 lncRNA downstream 344269 4917003 ~ 4917257 (+) True G50142
TU62739 lncRNA downstream 397275 4970009 ~ 4970248 (+) True G50153
TU62769 lncRNA downstream 576734 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 577161 5149895 ~ 5155484 (+) True G50181
AMCG00008579 mRNA upstream 49931 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008569 mRNA upstream 463835 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008559 mRNA upstream 538498 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008560 mRNA upstream 551846 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008555 mRNA upstream 600941 3957541 ~ 3961050 (+) True AMCG00008555
AMCG00008588 mRNA downstream 227720 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008587 mRNA downstream 251393 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008590 mRNA downstream 326711 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008593 mRNA downstream 470020 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008594 mRNA downstream 521630 5094364 ~ 5108804 (+) True AMCG00008594
TU62530 other upstream 396508 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 401929 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 1673095 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 1791947 2765879 ~ 2770044 (+) True G49523
TU61670 other upstream 2350477 2209483 ~ 2211514 (+) True G49340
TU62810 other downstream 1023289 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 1165807 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 2384877 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 3361095 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 3361095 7933829 ~ 7939771 (+) False G50583

Expression Profile