RNA id: AMCG00008587


Basic Information

Item Value
RNA id AMCG00008587
length 975
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00008587
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4824127 ~ 4835656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGATTCGTAGAGGCTGGCTCACCATCAATATAAGCATTATGAAAGGAGGCTCAAAGGAGTACTGGTTTGTGCTGACTGCGGAGTCCCTGTCCTGGTACAAGGATGAGGAGgagaaagagaagaaatatATGCTGCCTTTGGATAACCTGAAGCTCAGAGATGTGGAGAAAGGCTTCATGTCCACCAAGCATACCTTTGCCATCTTTAACACAGAGTCGAGgaaCGTGTATAAGGACCTGCGTCAGATCGAGCTGGCCTGTGACACTCAGGAGGACGTGGACAGCTGGAAGGCATCTTTCCTGAGAGCTGGAGTTTATCCCGAGAAAGACCAAGTGGAGAATGAAGAGGCCGGGCCTGCGGACACCTTCTCAATGGACCCCCAGCTGGAGAGGCAAGTGGAGACTATTCGTAACCTGGTGGACTCCTACATCGGTATCGTCAACAAGTCCATCAGAGACCTCATGCCAAAGACCATCATGCACCTGATGATCAACAGTGCTAAGGACTTCATCCACTCGGAGCTGCTGGCCTACCTGTATTCCTCTGGGGACCAAAACAGTTTGATGGAGGAGTCGGCAGACCAGGCCCAGCGGCGAGACGAGATGCTGAGGATGTACCACGCCCTGAAAGAGGCCCTCCACATCATCGGGGACATCAGCACCACCACCATCTCTGTGCCCGTCCCCCCTCCAGTGGACGACGGCTGGATGCAGAAGGAGAccagcCCCACTCCCCAGCGGCGACCAGCCAGCGCGGCCCCCCCACCCAGCCGCCCCCCCGCAGTGAGGGGCCCAACACCGGGTCCCCCACTAAACCCCACCCCGGCCTTCGGAGCACCCCCAATTCCCTCTCGGCCTGGCCCCCCCCAGACCGCCTATGGGATGGGCAACCAAGACCCGTTCAGCGCCCCCCCACAGATCCCCTCCCGGCCCGCGAGAGTCCCTCCAGGCGTGCCCCCCGGTATCCCCAGGTAA

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0061061 muscle structure development biological_process
GO:0060026 convergent extension biological_process
GO:0009790 embryo development biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62666 lncRNA upstream 240922 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 296575 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 335889 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 355364 4462362 ~ 4468763 (+) True G50055
TU62565 lncRNA upstream 515291 4307826 ~ 4308836 (+) True G50011
TU62727 lncRNA downstream 81347 4917003 ~ 4917257 (+) True G50142
TU62739 lncRNA downstream 134353 4970009 ~ 4970248 (+) True G50153
TU62769 lncRNA downstream 313812 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 314239 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 587167 5422823 ~ 5423045 (+) True G50185
AMCG00008588 mRNA upstream 11220 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008580 mRNA upstream 251253 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008579 mRNA upstream 312067 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008569 mRNA upstream 725971 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008559 mRNA upstream 800634 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008590 mRNA downstream 63789 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008593 mRNA downstream 207098 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008594 mRNA downstream 258708 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008601 mRNA downstream 779263 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 909148 5744804 ~ 5757635 (+) True AMCG00008606
TU62655 other upstream 251393 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 658644 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 664065 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 1935231 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2054083 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 760367 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 902885 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 2121955 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 3098173 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 3098173 7933829 ~ 7939771 (+) False G50583

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000174_00624749_00637683.mRNA True 3600 mRNA 0.51 18 CI01000174 623853 ~ 637729 (+)