RNA id: AMCG00008588


Basic Information

Item Value
RNA id AMCG00008588
length 1248
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00008588
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4800454 ~ 4812907 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTTTCTGCCCCGTGGATCAGGAATCGTAACCAGACGCCCCCTTATTCTCCAACTGGTAAACTGCAAAGCAGAATATGCGGAGTTCTTGCACTGTAAAGGGAAGAAGTTTGTGGATTTCGATGAAGTCCGGACAGAAATCGAGGCGGAGACAGATCGGATCACTGGCTCCAACAAGGGAATCTCTTCTATCCCCATCAACCTCCGTGTCTACTCACCCAACGTGCTCAACCTGACCTTGATTGACCTACCGGGTATGACCAAGGTGCCAGTGGGCGACCAGCCAGCCGACATCGAGCACCAGATCAGAGACATGCTGCTGCAGTTCATCAGCCGCGAGAGCTGCCTCATCCTGGCAGTCACCCCCGCCAACACCGACCTGGCCAACTCGGACGCCCTCAAGATCTCCAAGGAGGTCGACCCGCAAGGTTTGAGGACAATTGGTGTGATCACCAAGCTGGATCTGATGGATGAGGGCACGGACGCCAGGGACATCCTCGAGAACAAGCTGCTACCGCTAAGGAGAGGTTACATCGGAGTGGTGAATCGCAGCCAGAAGGACATCGATGGGAAAAAAGACATCCGGGCAGCCCTGGCAGCTGAGAGGAACAAACTGCAGAGCCAGCTGCTGTCCCTGGAGAAGGAGGTGGAGGAGTACAAGAACTTCCGACCTGACGACCCGACCCGCAAGACCAAGGCCCTGCTACAATGGAGTTTGACGAAAAGGAACTCCGACGAGAAATCAGCTACGCAATCAAGAACATCCACGGTGTCAGGCAAAACGGGCCTATTCACTCCGGACCTGGCGTTTGAAGCCATCGTCAAAAAGCAGATCATAAAGCTGAAAGAGCCCTGCCTGAAGTGTATTGATCTGGTCATTCAGGAGCTGATCAATACAGTCAGGCAAACTGGACTCTTTACGCCAGACCTGGCTTTCGAAGCCATTGTGAAAAAACAGATTCTAAAACTGAAAGAGCCCAGTCTGAAATGCGTTGACCTTGTCGTCTCCGAGCTTGCCAACTTAATCCGAAAGTGTACAGAAAAGCTTGGATCATACCCCAAACTGCGTGAGGAGACCGAGAGGATTGTCACCACCTATGTCCGTGAGAGAGAGGGCAAGACCAAGGACCAGgtTCTGCTGCTAATCGATATTGAGCTGTCCTACATCAACACAAACCATGAAGACTTCATTGGATTCGCCAAGTACGTATCGGACTCCCCTCCCTGCCGTCTCTGCATGTGCCCGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62666 lncRNA upstream 217249 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 272902 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 312216 4487999 ~ 4488238 (+) True G50061
TU62622 lncRNA upstream 331691 4462362 ~ 4468763 (+) True G50055
TU62565 lncRNA upstream 491618 4307826 ~ 4308836 (+) True G50011
TU62727 lncRNA downstream 104096 4917003 ~ 4917257 (+) True G50142
TU62739 lncRNA downstream 157102 4970009 ~ 4970248 (+) True G50153
TU62769 lncRNA downstream 336561 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 336988 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 609916 5422823 ~ 5423045 (+) True G50185
AMCG00008580 mRNA upstream 227580 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008579 mRNA upstream 288394 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008569 mRNA upstream 702298 4097796 ~ 4098156 (+) True AMCG00008569
AMCG00008559 mRNA upstream 776961 4022525 ~ 4023493 (+) True AMCG00008559
AMCG00008560 mRNA upstream 790309 4009198 ~ 4010145 (+) True AMCG00008560
AMCG00008587 mRNA downstream 11220 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008590 mRNA downstream 86538 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008593 mRNA downstream 229847 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008594 mRNA downstream 281457 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008601 mRNA downstream 802012 5614919 ~ 5635748 (+) True AMCG00008601
TU62655 other upstream 227720 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 634971 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 640392 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 1911558 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2030410 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 783116 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 925634 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 2144704 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 3120922 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 3120922 7933829 ~ 7939771 (+) False G50583

Expression Profile