RNA id: AMCG00008589


Basic Information

Item Value
RNA id AMCG00008589
length 3002
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00008589
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 4856907 ~ 4864403 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCGAGGAAAGTTCGGCCGTGAGAAGCAGGCAGAGGAAGTAAGTTTCCGGGAGTCTTTCCCTTTAATAACAAGAGAGGCAGCAGCAATGGAGCTCAGAATAACTATACAGGTTTGTTTGGCCATCGTTTCGGCCTTATGCGTGGGCCAGACAACGCCTTTCATCCCGGCCAAAGATAGCGAGTTCACCTTCATCTTGCCAGCCGGAagaattgaatgttttttccaAACAGCCACGAAAAACAGCACCATGGAGGTGGAGTACCAGGTGATTGCTGGGGCTGGTATGGATGTTGACTTCACCATCAACAACCCCAATGGGTATCAGCTCATCTCTGAGTTCAGGAAGTCGGACGGCGTTCACACAGTGGAGCCCACCGATGAAGGGGATTACCAGATCTGCTTCGACAACACCTTCAGCAAGTTCTCGGAGAAGATGGTGTTCTTTGAGGTGATATTCGAGGGCCCTGGGGGGGACGCGGGGCAGGACGATTGGTCACAGATGACTGAGCCCGAGAGCCTCCTGGAATACAAGCTCGAAGACATCCGGGAGTCGGTGGAGTCTGTGCACCGGCGGCTGGAACGCAGCATGCATTTCCAGAACGTCCTCCGCGCCTACGAGGCCCGTGACCGCATCCTGCAGGATGACAACCTGTGGCGCGTCACCTTCTGGTCGTGCCTCAACATGCTGGTGCTGCTGGTGGTGGCCATGGTGCAGGTGTACACCCTCAGGAGCCTCTTCGAAGATAAAAAGAAAGTGCGCACGTAATCGCCAGCGCCCCCCTCCCCCGACGATTGGGCTGGGGgtaaggaggaggagggatagGATAAGGGGAGCTCCTCAAGACCAAGTCTTCCACATTGACTGATCCCAAACTGTCCACTGTCCACTCCCTCGGCTCATCCCATCCCTGGGAGTGCTCTGTCACGAACAGGCTAGCCAAACTACTCCCTGGTTCCAGTTTACACTCGGATCTCCACATGCAATTAATTTCCATCGCAGTCTCAAACTAAGCACATGCCAGTCTTCCCTCCCTTCTACACGAGAGCTTTATTTAGTCCAGAGCGGATGGTTTCCTGTACACCCCTGTGTGCCCACTGGCCGCTTCACTCAAGGATCTGATCTCGCACTGCCAAGACGAAGATGTCCTTCACACCCCTGCCTGCAAAATGTGAAGCTTCTTATTGTTTCCTCACTGGATTTCGGTGTAGATTTTTATAGTTTTCTCACTGACTTTGTCTTCAGTTCACAGCGGTTACTCAAAGTGCCTGAGCTGCTCTTCAACTCTTCTGTTCAACATCCAAGctgaaatatgttgttttctttctttcaatgcAGCACTTGATATTGTGTAGAATATGGAGTCCGTGTTCGTATATATGATGATGCATCAATGGTGAATGAGATGTCTGATCATGGTACATGTACAAAAGAACACTGGCATCAGCCAATCATGATGTTCCAGGATGTGTAAGGTGCACCAGAGGTGATCTGTAGTGCTCATGTGCTTAATATCCTTCTTAGTCCCTTTCCTGATTTCTAACAGCTGTCACACAATTGATGAAACAAGGTGCAGCACTTGCATTAATGCTGTATACAGCAAGTTTCAATGACCTGTCCATCACAGTACATCTATACAAGCCTTGTACCTTCACTGTATTACTGCTGGTCCAGGTCTCTTAAACCAGCTAAtttgcaaaactgaaaatcagagCTTTGGTACCTTTCTCAGTGTGGGGGTCGTGAAGGTAGCCGGAATCCTGGAATTGATACcgtaaaaagcaataaaactgaatgGGTTCCACTTTATTGGGCTGAGCCCTTAAACTTGCAAAGAAAGCGTCAGACTAATATTACcagttaataaaatactgaCCTTTCCTAGAGAAATAAGCTCctttccatttttcatcttGTGTGTCAGAAAGCTTTAGAACTTTGATATTTCCAGGGTATCATATTTAGTCTGTTTTACAGCTGGGAAAATCTAAATGTACTCTGTTAGTTTCACCTACCTGTAGTCAGGCATGATGATATGTGGAAAGTGCCCACTCAGCCTTCAGGATTACTCAATCAACGCAATCAGCCTCCTGGCCCTGGTGCCCTCAGGTCTGGAGAGGCAGTCCTGGGATGTGTTCTGAAGTCTAGCTCCAGATACACTTTGGTTTTCTttggttgttatttttacattgtggtCAATCTTAGGTGGTACCTGCTGTCAATAAAGTGAGATGGCAAATCAAGCTCAGAATCCTTCTGAACCGCCTCAACATTCCCTTAAGGGTCTTCAGGTAAGCGCCTTTCACACAAGCGCATCGAACCAGGTTACGAGCCACTTTTTAGTAACTCGTACCTGACCCGCTTGTCATTTCTGGGGAAAGGGATCGACTGGGTTGTAGAAAGCAAATGTTTGGAATGATTACCTAAACTGGATTAAGCTTTTTTCTGTGATCTTCATGGAAAACATGTCACATCTACATAGAAATCAGATAGCATAGCATAGGCCCTGGTAGATTAGATTACTGTAACAACACTGGCTCCACATGTTGAGGATACAGGGGCAACTACTAAGCTGCTGCTCTTGTGAATTGTCTGAATTGGTACTAAAGTGCTAATTTTGTGAGTACAGTAGGAACACCTGTGGAAATGCAGTATACCTGAGAAGAGATGGCCAAACTCGCAGTAAGCAGCTGTTCCACAATGCAGTGACCGTAACCTTGACCTGCGTGAGATCCTTAGATATCGATGGCTGAGCTCGGATGCTACTGAGAGATTTGTGTGTTGTGGGTCACATGTGAAACAGAGACTGGAGTTCAGATGCAAGAGATGCAGTGTGTCCTACTCTGTTGTAGTTACTGAGAATCTCTTCATATAAGTGGAAAGCAAGTATGGATCcgagagggggaagggggggtgcaCAGAGCAAAATCACCTGGTTGTGCCTTTGGATTAGCTTGAaatggtatttgttttgttttttaaataaacttataCTTTTAAAA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20348 TMED1; p24 family protein gamma-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62708 lncRNA downstream 27286 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA downstream 27286 4827054 ~ 4829621 (-) False G50126
TU62578 lncRNA downstream 535019 4318783 ~ 4321888 (-) True G50020
TU62533 lncRNA downstream 693257 4162175 ~ 4163650 (-) True G49984
TU62373 lncRNA downstream 1047645 3723229 ~ 3809262 (-) True G49863
TU62815 lncRNA upstream 743950 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 795944 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA upstream 864647 5729050 ~ 5730043 (-) False AMCG00008609
TU62872 lncRNA upstream 1076792 5941195 ~ 5941527 (-) True G50268
TU62950 lncRNA upstream 1478273 6342676 ~ 6342964 (-) True G50337
AMCG00008582 mRNA downstream 89646 4758673 ~ 4767261 (-) True AMCG00008582
AMCG00008583 mRNA downstream 159126 4680530 ~ 4697781 (-) True AMCG00008583
AMCG00008585 mRNA downstream 183292 4662321 ~ 4673615 (-) True AMCG00008585
AMCG00008584 mRNA downstream 213291 4621852 ~ 4643616 (-) True AMCG00008584
AMCG00008586 mRNA downstream 235163 4616815 ~ 4621744 (-) True AMCG00008586
AMCG00008592 mRNA upstream 25665 4890068 ~ 4894519 (-) True AMCG00008592
AMCG00008591 mRNA upstream 81006 4945409 ~ 4953366 (-) True AMCG00008591
AMCG00008595 mRNA upstream 245313 5109716 ~ 5110501 (-) True AMCG00008595
AMCG00008599 mRNA upstream 292892 5157295 ~ 5165357 (-) True AMCG00008599
AMCG00008597 mRNA upstream 312196 5176599 ~ 5200865 (-) True AMCG00008597
TU62371 other downstream 1079553 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 1948242 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 2771901 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 2975945 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 3006625 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 884487 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 923347 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 2083486 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 2281222 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 3036932 7901335 ~ 7902606 (-) True G50602

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01154834_00000371_00001788.mRNA True 814 mRNA 0.53 2 CI01154834 371 ~ 2196 (+)