RNA id: AMCG00008593



Basic Information


Item Value
RNA id AMCG00008593
length 1099
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00008593
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5042754 ~ 5055756 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCTCTGGGGAGCTCAGGCATTGTTCCCAACCCAGCTGCGATGGAGAGGGGCCCTATAGGGACCACACTACTCCACCACCGTTTCAGTGGTGAACCCGTATCTCATATCACCCCAGACAGCAGCTCCTCCATCCCATTCTTTGCCTGTGAGCTGAAGGCAGTGGAGCCGTACAGCCGGGGCTTCTTCTGCGGGGACGAGACCATCACCTACCCGTACCTGACGAAGGAGTCCATCTCGGATGAGCTGCTCATCGCCGGGGGAATCATCATCACAGGGCTGAGTATCGCGCTGGGGGAGTGCTACCGGGTACGGTACCGCAGCGTGCGCTCGCGGGCCTTCGTCACCAACCTGTACGTGTCCACCCTGTACAAAGAGATCGGCAGCTTCCTGTTCGGCTGCTGCGTGGGCCAGTCGCTCACCAACATGGCCAAGCTCAGCGTGGGGCGGCTGCGGCCCCACTTCCTCACAGTGTGCAAGCTCAGCTACGCCGATCTCAACTGCACCGAGGGCAGCTACATCCAGGAGTTTGAGTGCCCCCAGCAAGACAAGAAACTGGTAATAGAGGCCAGgaaGTCCTTCTACTCCGGCCATGCTTCCTTTGCAATGTACACCATGCTGTATCTGGCGTTTTACCTGCAAGCCCGTTTCACGTGGCGCGGTGCTCGGCTTCTGCGCCCACTCGTGCAGTTCCTGTTGGTGATGCTGGCTGTGTACACGGGGCTGACCAGAGTGTCCGACTACAAACACCACCCCTCCGACGTGCTGACCGGCTTCCTGCAGGGGGCGCTGGTGGCCTACTGGGTGGTGAGTGTCTGGGGAGATGGGTTACCGCTCTCGCTGTCAGAGGCACAACTTCAAAATCCCAACGGAGGGCAGCACGCACTGTGGCACCGCAGCGTCTCTGTAGAGGCCCGGGGAGCAGCTGCGGCCCCTGCAGTTGTGAAAGAGCTGCTGCTGACACGGGAAGGAGGCCCGCAAGCAGCAGGcgtgaatgtgcatGCCTTCTACATCTCTACCATGTTCAAGATCCCAAACCCGAAGCCCACCGAGACCACCAGCTCACTGGACAGCCCGGTGTCCAGCCAACAGGCTATGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62739 lncRNA upstream 72506 4970009 ~ 4970248 (+) True G50153
TU62727 lncRNA upstream 125497 4917003 ~ 4917257 (+) True G50142
TU62666 lncRNA upstream 459549 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 515202 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 554516 4487999 ~ 4488238 (+) True G50061
TU62769 lncRNA downstream 93712 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 94139 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 367067 5422823 ~ 5423045 (+) True G50185
TU62788 lncRNA downstream 504265 5560021 ~ 5560609 (+) True G50196
TU62800 lncRNA downstream 523466 5579222 ~ 5580022 (+) True G50206
AMCG00008590 mRNA upstream 138681 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 207098 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 229847 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008580 mRNA upstream 469880 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008579 mRNA upstream 530694 4510990 ~ 4512060 (+) True AMCG00008579
AMCG00008594 mRNA downstream 38608 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008601 mRNA downstream 559163 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 689048 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 711008 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 788589 5844345 ~ 5847681 (+) True AMCG00008607
TU62655 other upstream 470020 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 877271 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 882692 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2153858 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2272710 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 540267 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 682785 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1901855 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2878073 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2878073 7933829 ~ 7939771 (+) False G50583

Expression Profile