RNA id: AMCG00008594


Basic Information

Item Value
RNA id AMCG00008594
length 1888
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00008594
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5094364 ~ 5108804 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCAGAGCAGCAGAAAGAGTGCTTATCGAGAGCGCCTCCAATTAGCTGCGGTGTGGAAAAGGTATTTTATCTGAGCACGCGTCTGAAGGCAAGCCTGTGGTGCAGTTCTGAGAAAAGACGAGCGCGAGTGGCTGCTGTAGATAAGCCTCAGGCGGCGGCGGCGGTGCCTGTGACCCCTGCGCTGATTGCGCCCGGCTGTCGGACGCCGAGTCCCCTCCTGGCTGGTGTGTTTGACATCTGCTCCTGTCCCGCAAATCCCTGCTTGCCTTTCAGATCGCAGACATCATTCCGCACTTTTCCCCACAAGCGGGGTCCCTGCGTCACGGTCACGGTCTATTGGTATTCGTACATGTCTGCCATGTCACAGTTGCTCATGATCTCCGCTGTGCTGGAGGACACATGCCGTCATCCTGCCATGACAGGTTGTAGCACTGTGGAAATCTCAACCGTTAAAGTAAATTGCACAgatgtgaaagaaaatgaaaactttaaatattCCGTGAAGGGATATGTGAAGTTAACTGAAGCAAGTATTACTGAAGAGAACTGGTATGAGGGGGATATCTcaattgcttattattattacaatccTATAGTAAAACAGTTCAGTAATGACACTGTAAAGGATATCGGCCCTGGCTATATCATTCTTCGCAACTGTCAGAATGTCAATTACACCATTTTTAATGGAAAGGAGCACAGAATTTACTTCATAGCTTTTGACCCAGGAAATCAGGATGAGAGTCAGATATCACATACATACTGGATAATTGTTGTCTTAATCGCTCTCTGGATCGCCGGGTGCTTTATTTGGATATGTCGACGCAGATCTGTAAAGCTTGAGACCACGGATACAACTGATGAAGCCTCAATGGATCTGCAGGGACCCTGAGACCAAGCATTTAACGAAAATGAGATCTCATCTGGGGAACACTTGTTTGATGATGCGTGGAGctacaaacaaaccaagaaacaacacgctttttgtttcttgtattattattattattattattattattattattattattattattattttatataaaataccaCCAACAGTTTTAAGATTAATTATACTGTTGACCAAACTGGTTGAAATGCAAACATCACACTGGTTGGTAAAAGCCTTTCATTTGCTAGGAACATACTGCTAGTATGTCACTATGTCTCAGggaacagaaaatgtattttgaacacCAAAGCACATTCCTGTTGtataaaatagaatatatatgtatataaaaagattTAAACAAGTGTAAACATCTTGCCgagaccttcatccagcagtgcatgatatatatttatatattttttaaataatgatgatggtgGGGGTTGGTGTTTCCAGGAGGCCGCTCACACattgaatacatattattttaaaaagattatattcataaaggaatacaaatgtattcagtatCTTCAGATAGTGTTCCATAGAAAAGCAGCATTCTGTAGCCAGGTGTCAGCACTCCTGCACTGGCTGCCAATCACAGTAGCCAGCAATAAACACTGCCAGGTCTGGACACATCTGAGGGGGGCACCAAAACCACACTTTGACCCACCTTCCAATCAGGCTTGGATGTGTAACTGGTATGAAGTGACTTCTTACTATAAATTAAACCACGTTCAGGTAAAGATGTGTACTTTGCGATTGGTGGGTCAGTCAGGGTGGTGATTTGGTCTCAGCCcattgttttcttgtgaaaGGGAAACGGGGCTGTCAGTGAGGGATAGCGTGTctaaaatgcagtttgtgtttgaaataaaaccttttgtAATGTACTTGTAAAAAAACGTAGAAAGTCTTTGCACTGaagttctgaaaaaataaaaccggTTGCAGAAATAAAGTCaaggtaattatttaa

Function

GO:

id name namespace
GO:0004953 icosanoid receptor activity molecular_function
GO:0004954 prostanoid receptor activity molecular_function
GO:0004955 prostaglandin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62739 lncRNA upstream 124116 4970009 ~ 4970248 (+) True G50153
TU62727 lncRNA upstream 177107 4917003 ~ 4917257 (+) True G50142
TU62666 lncRNA upstream 511159 4582902 ~ 4583205 (+) True G50086
TU62640 lncRNA upstream 566812 4515496 ~ 4527552 (+) True G50066
TU62630 lncRNA upstream 606126 4487999 ~ 4488238 (+) True G50061
TU62769 lncRNA downstream 40664 5149468 ~ 5149857 (+) True G50180
TU62770 lncRNA downstream 41091 5149895 ~ 5155484 (+) True G50181
TU62777 lncRNA downstream 314019 5422823 ~ 5423045 (+) True G50185
TU62788 lncRNA downstream 451217 5560021 ~ 5560609 (+) True G50196
TU62800 lncRNA downstream 470418 5579222 ~ 5580022 (+) True G50206
AMCG00008593 mRNA upstream 38608 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 190291 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 258708 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 281457 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008580 mRNA upstream 521490 4562142 ~ 4572874 (+) False AMCG00008580
AMCG00008601 mRNA downstream 506115 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008606 mRNA downstream 636000 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 657960 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 735541 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 773189 5881993 ~ 5883048 (+) True AMCG00008604
TU62655 other upstream 521630 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 928881 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 934302 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2205468 2886766 ~ 2888896 (+) True G49583
TU61936 other upstream 2324320 2765879 ~ 2770044 (+) True G49523
TU62810 other downstream 487219 5596023 ~ 5596799 (+) True G50215
TU62843 other downstream 629737 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1848807 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2825025 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2825025 7933829 ~ 7939771 (+) False G50583

Expression Profile