RNA id: AMCG00008599


Basic Information

Item Value
RNA id AMCG00008599
length 752
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00008599
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5157295 ~ 5165357 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctacAATGGGGAATCACCTTCTTACCAACCCCGTCCTGCAGACTCGTTCTGGTACCAGTCCCTACAACACTCTACTGGCTGAGTCCGTTGGCTTCAATCCTCCCTCTCCCAGCAGCCTGGGCGGCCGGCGCAACCTCAGCGACGCGGCTGCCTTCGAGAAGATGATCATCTCTGAGCTGGTGCACAACAACCTGCGCGGGGGCGGCGGCGGGGAGAGAGTGGGCAGCCTGGCCAAGGGGCACGGCGGGGTGCCGGGTCTGGGGGAGCCCGGGCAGGGCGGGGGCTCGGGGGAGGACGACGGCATGGCGGCCGACGCGCCCCAGGAGAACATCGACATCGAGTTGATGTACAAAGCCTTGGAGGAGCCCCTGCTGCTACAGAGAGCACAGTCCATCCTGTACCAGAGCGACCCCGAGGAGTCCGAGAGCTACACCGGCGAGCTGACCGAGGGCCTGGACGGCCAGCTGCAGTCGCCCAACAGAGACTCCCTCTACACGAGCATGACCAACCTGCGGGATTCGCCCTACCCCGACAGCAGCCCCGAGCCCCTGGAGGTGGTGCCCCGCTCGGCCCAGCCCCCCGAGGAGCTGTACTACGGCTCGGGGCGGCCGGCCCTGGGAGCCCGGGGGCAGATGCAGACCTTCTACCAGCCCCAGGCCCGTCGGCCCAGCGGGGAGGGCTACCTGGTGCAGGTGGGCATGGAGGCGGGCATGAGCGAAGGGGACGGGCAGATGCAGTTGGTCACGAGTCTC

Function

GO:

id name namespace
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62708 lncRNA downstream 327674 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA downstream 327674 4827054 ~ 4829621 (-) False G50126
TU62578 lncRNA downstream 835407 4318783 ~ 4321888 (-) True G50020
TU62533 lncRNA downstream 993645 4162175 ~ 4163650 (-) True G49984
TU62382 lncRNA downstream 1376191 3779775 ~ 3781104 (-) True G49871
TU62815 lncRNA upstream 442996 5608353 ~ 5610329 (-) False AMCG00008602
TU62867 lncRNA upstream 494990 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA upstream 563693 5729050 ~ 5730043 (-) False AMCG00008609
TU62872 lncRNA upstream 775838 5941195 ~ 5941527 (-) True G50268
TU62950 lncRNA upstream 1177319 6342676 ~ 6342964 (-) True G50337
AMCG00008595 mRNA downstream 46794 5109716 ~ 5110501 (-) True AMCG00008595
AMCG00008591 mRNA downstream 203929 4945409 ~ 4953366 (-) True AMCG00008591
AMCG00008592 mRNA downstream 262776 4890068 ~ 4894519 (-) True AMCG00008592
AMCG00008589 mRNA downstream 292892 4856907 ~ 4864403 (-) True AMCG00008589
AMCG00008582 mRNA downstream 390034 4758673 ~ 4767261 (-) True AMCG00008582
AMCG00008597 mRNA upstream 11242 5176599 ~ 5200865 (-) True AMCG00008597
AMCG00008596 mRNA upstream 49039 5214396 ~ 5222563 (-) True AMCG00008596
AMCG00008598 mRNA upstream 97795 5263152 ~ 5276428 (-) True AMCG00008598
AMCG00008600 mRNA upstream 399171 5564528 ~ 5585037 (-) True AMCG00008600
AMCG00008602 mRNA upstream 421718 5587075 ~ 5608487 (-) True AMCG00008602
TU62371 other downstream 1379941 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 2248630 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 3072289 2078703 ~ 2085006 (-) True AMCG00008474
TU61724 other downstream 3276333 1879621 ~ 1880962 (-) True G49375
TU61698 other downstream 3307013 1798845 ~ 1850282 (-) False AMCG00008462
TU62870 other upstream 583533 5748890 ~ 5885450 (-) True G50267
TU62882 other upstream 622393 5787750 ~ 5792584 (-) False AMCG00008608
TU63135 other upstream 1782532 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 1980268 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 2735978 7901335 ~ 7902606 (-) True G50602

Expression Profile