RNA id: AMCG00008601


Basic Information

Item Value
RNA id AMCG00008601
length 2749
RNA type mRNA
GC content 0.47
exon number 13
gene id AMCG00008601
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5614919 ~ 5635748 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGCTTCAAAACGCGCTGCGGTATCTTGTGCGTTTGCGTCGCTCAAGTGATTCTGTCAAAACTGCAAATTCATAGTTCAGATGAACTCACAAAGCCGTACCATGTACAGCCTGTtttcactgtgttgtgttgtgatttATCTTGGAAGACTTATGGTCTTAGGTGAAATCCTATGAGACAGCCCTGGCACAGGAGGTGGAGAGTCGGCGGGCGGTACAAATAGCCTCAGATTGGACGTGCGCTTCAATCCCGAGAGCTGCGCCGCACGCAGTCTGCACTGACCGGACCCAGGATGCTGCCCTCTCTGGAGAGCGTTTGGGCCTCAGTGTTCCCGGGCCTCTCTCCCCTGCAGGCGGGGCTGTTGAGCGTCACCCTGCTCCTGCTCTGCACGCTTCTGACCAAGGCCACCCTGATGGTCGTCTCCTTCCTGTGGCGCTACAACTGCAACTCGCAGCGGCTGCGCTGCTTCGCCCAGCCCCCGAAGCGCAACTGGCTGCTGGGCCATCTTGGCATGATGCGGAATACAGAGGAAGGCTTGCGGTCCGTGGATGAGCTGGTCAAGACCTATGAGCATTCCTGTTCTTGGTTGTTTGGCCCCTTCTACTCCATCATCAGACTCTTCCATCCTGACTACATCAAACCCATTCTGCTGGCCTCAGcTTCCATCGCTTACAAAGATGAACTCTTCTACGGATTTCTGCGACCATGGCTAGAAGGCTCCTCACTCCCGCCTTTCACTTTGACATCCTCAAGATCTACGTGGACATTTTCAACAAATCCACCAACATCATGCATGCTAAGTGGCGCCGCCTATTGGCTGAAGGGACAACCTCCTTCGACATGTTTGAGCAGATCAGTCTGATGACTCTGGATAGCCTACTGAAATGCACCTTCAGCTATGACAGTAATTGCCAAGAGCACCCCAGTGACTACATTGCAGCCATCTACGAGCTTAGCACACTGGTGGTCAAGCGGGAGCACTACCTCCCTCACCACTTCGACTGGCTGTATTGGCGGTCAGAGGAGGGGCGGCGCTTCCGCAAGGCCTGCAATCTGGTGCACCAGTTCACTGCCGACATCGTCCAGCGCCGCCGAGCCCTGATCCAAGAGCAGGGGTCCGAAGAGCAGCTGAGACCCAGGAAGGGCAAAGTGACCGATTTCATCGATGTCCTCCTCCTTTCCAAGGATGATGATGGCAATGGACTCTCTGTTGAAGAAATAAAAGCGGAGGCCGACACGTTCATGTTTGAAGTACACCCCGAATACCAGGAGAAGTGCCGGGCCGAGGTCAATGCATTACTGCAGGCTCAAGACAACAAGGAAATTGAGTGGAATGATCTCTCCAACCTCCCTTTCACCACCATGTGCATTAAGGAAAGCCTGCGTCTGCACCCCCCCGTCACTGCGGTGACCCGTCGCTTCTCCGAGGACATGAAAGTGCCAGAAGGTCGAGTTATCCCTCAAGGAAATATCTGTCTGGTCAGTATTTATGGGACCCATCACAACCCCAAAATCTGGCCTGATCCTGAGGTTTATAATCCCTACCGCTTTGACCCAGACCAGTCAGAGGGGCGATCCTCACATGCTTTCATCCCTTTCTCAGCAGGGCCCAGAAACTGTATCGGTCAGAACTTCGCCATGGCCGAGATGAAAGTGGTGGTGGCGCTGACCTTGCATCACTTCCGGGTCACTCCAACAGCCGAAGAGGTCCGCCGCAAGCCAGAGCTCATCCTACGAGCTGAGGGGGGGTTGTGGCTACAGCTGGAGCCAGTTACCCAACAGTGAAGCACCCATCTATAAAGAGTAGATAGTATTGTCTGGTGCCATACATTTTCCTGGTTAATCAGTTTGCTTACTTGTTGCAcaggcaattattattattcaaattgtcACTTTGGTATCAGCAATtgtgggaagaaaaaagaaaaaaaaaagctttctgcTGCAGACCAATAAGCTTTTTTTAGATGCAAGACTAgagtgttattttatatttttagttttttactgcTGACTCTTTCAATGTGAAATTGTGTTTATAGTtaaaacatatgcatatatttagGTTTTATGTTCTCTGTTTAGATAATGCCTTGCGCACATACAATTTTTActggtttattattaatacagccCCAGTACCATTGTAAAGCATTTACCCAGTGATTGATGAAACCTACTACTTAATACTTTTCAACACTTTTCTCTTATTTTCACAACATTTGATAAAGTATGGTACTGTACCTTTTCCCACCACTATATGGATTGTACTATATTACCAATTTTGTGGGGAAATCTTTCAAGAAATGAATCCCTATGTATAACTTGCACATACTGGATACCTACTATCGTTatatctgaatttatttttggcACTTTACGTTCCATTTATTACTCTATCTGTTCCGACTGTACTGCACAAAGCACTGAGGGATTGATTACCAGAATTTCTGCTCTTACCTGAACTGCCCCCAAACAGAATCATACACCCTCTCCCCATTCATTGAACTCTAAATAGGACATCTGCTGTATATTGTATTACCTTGCTGTTACTGTACCACGTTTCTTGAGAACAAAGGTATTTGGGGTGACAACTGGAAGTCACCCTTGGATAaggggcatctgccaagaaataaatacacacaataacataTACATTCagtgatgtttctttttcattattattctgttGTATGATGCTAAATTGTATCTGAAAGACGAGAGAGTAAACAAATTGTGGAtgggac

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K17731 CYP4F22; ultra-long-chain fatty acid omega-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62809 lncRNA upstream 19867 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 21988 5592436 ~ 5592931 (+) True G50213
TU62807 lncRNA upstream 23718 5586800 ~ 5591201 (+) True G50212
TU62800 lncRNA upstream 34897 5579222 ~ 5580022 (+) True G50206
TU62788 lncRNA upstream 54310 5560021 ~ 5560609 (+) True G50196
TU62856 lncRNA downstream 305459 5941207 ~ 5941527 (+) True G50255
TU62949 lncRNA downstream 706946 6342694 ~ 6342978 (+) True G50336
TU62953 lncRNA downstream 736684 6372432 ~ 6372911 (+) True G50340
TU62955 lncRNA downstream 738917 6374665 ~ 6375034 (+) True G50342
TU62960 lncRNA downstream 854909 6490657 ~ 6518591 (+) True G50346
AMCG00008594 mRNA upstream 506115 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008593 mRNA upstream 559163 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 710846 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 779263 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008588 mRNA upstream 802012 4800454 ~ 4812907 (+) True AMCG00008588
AMCG00008606 mRNA downstream 109056 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008605 mRNA downstream 131016 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 208597 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 246245 5881993 ~ 5883048 (+) True AMCG00008604
AMCG00008616 mRNA downstream 395099 6030847 ~ 6045870 (+) True AMCG00008616
TU62810 other upstream 18120 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1042185 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 1449436 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 1454857 4156088 ~ 4160062 (+) True G49980
TU62012 other upstream 2726023 2886766 ~ 2888896 (+) True G49583
TU62843 other downstream 102793 5738541 ~ 5742750 (+) True G50243
TU63090 other downstream 1321863 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2298081 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2298081 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 2677677 8313425 ~ 8317602 (+) True AMCG00008664

Expression Profile