RNA id: AMCG00008604



Basic Information


Item Value
RNA id AMCG00008604
length 1056
RNA type mRNA
GC content 0.46
exon number 1
gene id AMCG00008604
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5881993 ~ 5883048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCAGGAGTTAGGAGAAGATTTCCAGTTTCCTTCATTACCCTTTTTCTGTTGGTGATTGCTGGCATTATTGTAACCCAGTTATTCTTTAATAAGTGGAATCTAAAGGTGATCACATGGTGGCTGAACAAGCAAAAAGTGCAAGCTGTAGAAAATGTTACCTTGAGCACCTTGAGCACCTTGACCACCAACACTCCACCACCTTGGCATGGGCTGATTGATATAGTGTATCCATATAAGTACACCTACATCCTCAATGAGCCAGACAAGTGCAAGGGAAAGATTCCCTTCTTGGTCCTCATGGTCCCAGTTGCTCCAGACAACCACGGTGTAAGAGACATCATCAGAAAGACCTGGGGCAATGAGAGCTTGGTCCCAGGGGTGAACATCCTCCGGATCTTCTATGTAGGCCTATCCTCTGGGCAACAGGCCCCTCACATCCAGGGAAAGTTGGAGAGGGAGAGCCGAGAGCACCGTGATATCATCCAGAAGGATTTTGTGGACAGTTACCGCAACCTGACCATCAAGACCATGATGATGCTGGACTGGCTGGTCTCCTACTGCCCAACAGCTTCCTACACTATGAAGATTGACACAGATTCATTTCTCAATGTAGACAAGCTGGTCAATGGTCTTTTGGACCCCCGAGCGGTACGTGTCAAGCAGGACTACATCACAGGGGTGGTCATAGAAGGTGGAAGAGTTAGAAGAGACAAAAGTTCAAAGTGGTATGTGCCTAAAGAGGTGTATCCCTACAGCACATATCCCTTGTATGTCTCAGGGATTGGCTATGTCTTGTCTGTGGACCTGGTTAAGAAAATTTTGAACAAGTCCCAAAGTGTCAAGCCTTTTTTCTTAGAAGATGTCTATGTGGGAATGTGCTTGGAGGCACTGAAAATTAAGCCATCCTATCCCCCAAGGAGATCCTACTTCCATCTCTATCCTTTCCCCTATGATCGCTGCCAGTTTTCCAACATTATTCTTATGACGGATATCAACATCACTGAATTTCTAGATTACTGGAGTGATTTTCAAAAGCCTGGTGCTCACTGTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62809 lncRNA upstream 286941 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 289062 5592436 ~ 5592931 (+) True G50213
TU62807 lncRNA upstream 290792 5586800 ~ 5591201 (+) True G50212
TU62800 lncRNA upstream 301971 5579222 ~ 5580022 (+) True G50206
TU62788 lncRNA upstream 321384 5560021 ~ 5560609 (+) True G50196
TU62856 lncRNA downstream 58159 5941207 ~ 5941527 (+) True G50255
TU62949 lncRNA downstream 459646 6342694 ~ 6342978 (+) True G50336
TU62953 lncRNA downstream 489384 6372432 ~ 6372911 (+) True G50340
TU62955 lncRNA downstream 491617 6374665 ~ 6375034 (+) True G50342
TU62960 lncRNA downstream 607609 6490657 ~ 6518591 (+) True G50346
AMCG00008607 mRNA upstream 34312 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008605 mRNA upstream 105311 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008606 mRNA upstream 124358 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008601 mRNA upstream 246245 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008594 mRNA upstream 773189 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008616 mRNA downstream 147799 6030847 ~ 6045870 (+) True AMCG00008616
AMCG00008617 mRNA downstream 225915 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008618 mRNA downstream 305446 6188494 ~ 6207751 (+) True AMCG00008618
AMCG00008619 mRNA downstream 422678 6305726 ~ 6363030 (+) True AMCG00008619
AMCG00008626 mRNA downstream 809697 6692745 ~ 6719091 (+) True AMCG00008626
TU62843 other upstream 139243 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 285194 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1309259 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 1716510 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 1721931 4156088 ~ 4160062 (+) True G49980
TU63090 other downstream 1074563 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2050781 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2050781 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 2430377 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 2567118 8450166 ~ 8666548 (+) True G50747

Expression Profile