RNA id: AMCG00008605


Basic Information

Item Value
RNA id AMCG00008605
length 1383
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00008605
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5766764 ~ 5776682 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAAGAAGCCTTCCGAAAGGTTTTGTAAAACCTGCAAGCTCAATTTCTGCAAGAATTGTCTGAGGAAACTTCACAGCAACTCTGCTTTTCAGTCTCACACCTTGATCAAACCTGTTAAAAACCCGGGTGAATTAGCATGCTTCTGCCACCCTGGAAAGATCTTGACGCACTACAGCTTTACTGATGGAAGAACCATTTGTGAAGAGTGCATGAATGTCACCTCTGACACTCCAGTGATTTCCGAGGCTTATGTCAACAAATCAAGAGGCTTACATGCAGCTCTAGATCAAGCAATGAAAGCAAAAGAACTGTGTCAATCTGACATCAGAGATATTGGATTTTTAAAATCCAGACTTAAGCCACAAGTGAAGGAGCTGAACAGAAGGGTGACTGAAGGATTCAAGGACTTGCACAAGAAGCTCaaagaaaaagaggaggagATAAAAGGAGCTATTGAGAAGTTGTACAAGGAAACTGAAGAAGATGCTGAGCAGTTCATCAGCGATTCCTCTAAATATGTTTCTATCCTGGAGGGTCTGGTTCAGTTCTCTGAAGAGTCCCTGAAGGAGAAGAACGAAACAGTGTTCCTGCAGGGCGTTGATAATACCATCTTCCAGATCGGCAAGGTTTTAGAGAGGAATTACCAGTCCTGTGAGACTTTAAAACAAGaaccacttaaaaaaataacggTAGACTTTAAAAGTATCAAGGATGGTTTGAGCAATCTAGTCTGTGAAATCAAGGATGACATACAGCTGCCCAAACAACCATTCATCTACCGGCACACTGTGAATGGAGTCTCAGTCCAGATCAATTGGATGTTTCCCCTTGGAGAGGGTGTTAATTCTTTTGATGTTCATTTCCAAGAAGTAGTTTCTCTCAATTCCACCATGGATATACCACAGGATCAAGGCAAGCTGGTCTCTGGTATAGAGAAATGCTTCTACAAAGCAGAGTGTCTGAATCCCAATGCCCAGTACATCTTTACAGTTCGGTCACAGAACATGCTTGGAAAGGGGTCATGGAGTCATGCTTACAGGCCATCAACACGCTGTCATGCAGAGATTGGGGGAGGTGGGATACCTGGGAACAATGCCACCACCCAGGGTCCATCGAGCAGACTGCCCTCATGGTGCTGCAGTACCTGGCGGAGGATATGGGGTGGGTGCCGTCCCGAGAGCCAGAGGGGGAGGAGCTGGCCCGGGGAGGACGCGCCCGCAACGCCCGGGGTCgtcaggctgctgctgctgctgccgcccgGAGATGACGTGTGCGCACCGCCTGGGGCCGCCAGTCTGCTGCTGCAGCCCAGGGATGACGTGCCCTCACCGCCCGGGTCCGACAGCCTGCTGCCGCTGCCCAGGGATGTAGTACTGGTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62809 lncRNA upstream 171712 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 173833 5592436 ~ 5592931 (+) True G50213
TU62807 lncRNA upstream 175563 5586800 ~ 5591201 (+) True G50212
TU62800 lncRNA upstream 186742 5579222 ~ 5580022 (+) True G50206
TU62788 lncRNA upstream 206155 5560021 ~ 5560609 (+) True G50196
TU62856 lncRNA downstream 164525 5941207 ~ 5941527 (+) True G50255
TU62949 lncRNA downstream 566012 6342694 ~ 6342978 (+) True G50336
TU62953 lncRNA downstream 595750 6372432 ~ 6372911 (+) True G50340
TU62955 lncRNA downstream 597983 6374665 ~ 6375034 (+) True G50342
TU62960 lncRNA downstream 713975 6490657 ~ 6518591 (+) True G50346
AMCG00008606 mRNA upstream 9129 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008601 mRNA upstream 131016 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008594 mRNA upstream 657960 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008593 mRNA upstream 711008 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 862691 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008607 mRNA downstream 67663 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 105311 5881993 ~ 5883048 (+) True AMCG00008604
AMCG00008616 mRNA downstream 254165 6030847 ~ 6045870 (+) True AMCG00008616
AMCG00008617 mRNA downstream 332281 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008618 mRNA downstream 411812 6188494 ~ 6207751 (+) True AMCG00008618
TU62843 other upstream 24014 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 169965 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1194030 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 1601281 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 1606702 4156088 ~ 4160062 (+) True G49980
TU63090 other downstream 1180929 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2157147 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2157147 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 2536743 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 2673484 8450166 ~ 8666548 (+) True G50747

Expression Profile