RNA id: AMCG00008606



Basic Information


Item Value
RNA id AMCG00008606
length 552
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00008606
representative True

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5744804 ~ 5757635 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGTCTGGAGGCTGTGTACCTGTTCCTAAAAGTGAGAAACCTGAAGGTCATCAAACCCAGTCGCCACCAAGCACTACGAAGGAGATACCAACTGCTGGTTGGGTACGGCATCCCTGCCATCATTGTGGCCGTGTCTGCAGGAGTGTTTCCAGGTGGCTACGGGAGGGAGGATGATAATAAACAATCATCTATTTTGTTCCAGGTTAACACCATTCTCTTCATTGCAATTGTGTGGTGCATTCAATCATCTCTGTCTGAGCTCAATGCTGACCTGTCCAAAATTAAAGATACCAGAGTGATGACTTTCAAGTGCTTTGTGCAGTTTCTCATACTGGGCTGCAGCTGGGTCTTGGGCTTCCTGACAGAGacccatttttttaaaatcatgttcGTCATCATCAACTCTCAGCAGGGCACGTTCATCTTTATTGTGTACTGCCTGCTCAATGCAGAGACTTATGCTGTGGACCCCAGGACATCCTGTGGCGCTGGAGTGTCGGGACCAAATGGGATTTTACCAAGTGGAACGCTGGAGAACCCAATGACTTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU62809 lncRNA upstream 149752 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 151873 5592436 ~ 5592931 (+) True G50213
TU62807 lncRNA upstream 153603 5586800 ~ 5591201 (+) True G50212
TU62800 lncRNA upstream 164782 5579222 ~ 5580022 (+) True G50206
TU62788 lncRNA upstream 184195 5560021 ~ 5560609 (+) True G50196
TU62856 lncRNA downstream 183572 5941207 ~ 5941527 (+) True G50255
TU62949 lncRNA downstream 585059 6342694 ~ 6342978 (+) True G50336
TU62953 lncRNA downstream 614797 6372432 ~ 6372911 (+) True G50340
TU62955 lncRNA downstream 617030 6374665 ~ 6375034 (+) True G50342
TU62960 lncRNA downstream 733022 6490657 ~ 6518591 (+) True G50346
AMCG00008601 mRNA upstream 109056 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008594 mRNA upstream 636000 5094364 ~ 5108804 (+) True AMCG00008594
AMCG00008593 mRNA upstream 689048 5042754 ~ 5055756 (+) True AMCG00008593
AMCG00008590 mRNA upstream 840731 4899445 ~ 4904073 (+) True AMCG00008590
AMCG00008587 mRNA upstream 909148 4824127 ~ 4835656 (+) True AMCG00008587
AMCG00008605 mRNA downstream 9129 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008607 mRNA downstream 86710 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008604 mRNA downstream 124358 5881993 ~ 5883048 (+) True AMCG00008604
AMCG00008616 mRNA downstream 273212 6030847 ~ 6045870 (+) True AMCG00008616
AMCG00008617 mRNA downstream 351328 6108963 ~ 6119352 (+) True AMCG00008617
TU62843 other upstream 2054 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 148005 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1172070 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 1579321 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 1584742 4156088 ~ 4160062 (+) True G49980
TU63090 other downstream 1199976 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 2176194 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 2176194 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 2555790 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 2692531 8450166 ~ 8666548 (+) True G50747

Expression Profile