RNA id: AMCG00008610


Basic Information

Item Value
RNA id AMCG00008610
length 588
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00008610
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 5924564 ~ 5934702 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGGAACTCAAGACTGCACTGAAGTCCCTGCAGAAGAAGCTGGAAGCCTATTATAGAGTTAAACGAATATGTAATCAAACAGCAAACAACTTTGAGATACAATTTGAGCAAACAGAGAAGCAGATGAAGAAGGAGTTTGAGGAACTTCACATGTTTCTATGGGATGAAGAGGCAACCAGAATAGCTGCATTAAAGGAGGAAGGGGAACAAAAGAGGCAAATGATGAACAATAAGATTGAGAACATTACAAGAAATATATCAACCCTTTCAGACACAATCAGGGCCCTTGAGGAAGACATTGGGGTTGAAGGAATATCATTTCTTCAGTGCCCAGTGCAGGATCCAGAGGGGGTTTCAGGAGCGCTGATAGATGTTGCCAAGCACCTGGGCTCTCTGAAGTACAGAGTGTGGGAGAAGATGCTGGGGATTGTTCAATACACTCGCCCTGTCCCCCCCAGCACCAACCAAATAGCCCAGTGCCCAGTGCAGGATCCAGAGGGGGTTTCAGGAGCGCTGATAGATGTTGCCCAGCACCTGGACTCTCTGAAGTACAGAGTGTGGGAGAAGATGCTGGGGATTGTTCACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62867 lncRNA downstream 138236 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA downstream 194521 5729050 ~ 5730043 (-) False AMCG00008609
TU62815 lncRNA downstream 314235 5608353 ~ 5610329 (-) False AMCG00008602
TU62708 lncRNA downstream 1094943 4820240 ~ 4829621 (-) True G50126
TU62707 lncRNA downstream 1094943 4827054 ~ 4829621 (-) False G50126
TU62872 lncRNA upstream 6493 5941195 ~ 5941527 (-) True G50268
TU62950 lncRNA upstream 407974 6342676 ~ 6342964 (-) True G50337
TU62980 lncRNA upstream 691407 6626109 ~ 6627025 (-) True G50361
TU62977 lncRNA upstream 691670 6626372 ~ 6627025 (-) False G50361
TU62993 lncRNA upstream 712309 6647011 ~ 6651343 (-) True G50372
AMCG00008608 mRNA downstream 130569 5786620 ~ 5793995 (-) True AMCG00008608
AMCG00008609 mRNA downstream 138269 5655689 ~ 5786295 (-) True AMCG00008609
AMCG00008603 mRNA downstream 271032 5635772 ~ 5653532 (-) True AMCG00008603
AMCG00008602 mRNA downstream 316077 5587075 ~ 5608487 (-) True AMCG00008602
AMCG00008600 mRNA downstream 339527 5564528 ~ 5585037 (-) True AMCG00008600
AMCG00008612 mRNA upstream 14614 5949316 ~ 5951869 (-) True AMCG00008612
AMCG00008611 mRNA upstream 115114 6049816 ~ 6052478 (-) True AMCG00008611
AMCG00008614 mRNA upstream 331296 6265998 ~ 6295839 (-) True AMCG00008614
AMCG00008615 mRNA upstream 386699 6321401 ~ 6331672 (-) True AMCG00008615
AMCG00008613 mRNA upstream 438822 6373524 ~ 6376656 (-) True AMCG00008613
TU62870 other downstream 39114 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 131980 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2147210 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3015899 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 3839558 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 1013187 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 1210923 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1966633 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 2199879 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 2334321 8269023 ~ 8269326 (-) True G50710

Expression Profile