RNA id: AMCG00008614


Basic Information

Item Value
RNA id AMCG00008614
length 579
RNA type mRNA
GC content 0.45
exon number 5
gene id AMCG00008614
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6265998 ~ 6295839 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGTGTGTTCAATCATAGCAGGATTCCTACATTACCTTTTCCTGGCCAGCTTTGTGTGGATGTTCCTGGAGGCAGTTCAGCTCTTCCTGCTGGTGAGGAACCTGAAGAAAATGCAGGTCCTTCAGAGACAGGGACTGGGCTGTGGATACCTGCTGCTGATTGGCTACGTTACTCCAGCTATCATTGTGGGCGTGACTGCAGGAATAGACCCAAATGATTACGGAAGCTCTGAGGCaTGCTGGCtgaacaacaatacaaacatcaaGTGGAGCTTTCTGGGCCCTGTTATTTACATCATTGCAGCAAACTTCCTTCTCTTCATATCAATTCTCTGGAATCTGAAGTCCACTCTAGTCCATCTGAAGAGTAATATCTCCCAAATGAGAGACACCAGggtaATGGTTTTCAAAACTCTTGTCCAGTTTGTTATACTGGGTTGCAGCTGGCTCCTTGCCTTTCTCCCAAGTGACAAAGTGTTCTCATATGCATTTATCATCCTCAACTCACAGCAGGGCACTTTCATCTACATAGTCCACTGCTGGCTGAACAAAGAGaTCTATAAGCATAACAGCAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62872 lncRNA downstream 324471 5941195 ~ 5941527 (-) True G50268
TU62867 lncRNA downstream 479670 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA downstream 535955 5729050 ~ 5730043 (-) False AMCG00008609
TU62815 lncRNA downstream 655669 5608353 ~ 5610329 (-) False AMCG00008602
TU62707 lncRNA downstream 1436377 4827054 ~ 4829621 (-) False G50126
TU62950 lncRNA upstream 46837 6342676 ~ 6342964 (-) True G50337
TU62980 lncRNA upstream 330270 6626109 ~ 6627025 (-) True G50361
TU62977 lncRNA upstream 330533 6626372 ~ 6627025 (-) False G50361
TU62993 lncRNA upstream 351172 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA upstream 351802 6647641 ~ 6651297 (-) False G50372
AMCG00008611 mRNA downstream 213520 6049816 ~ 6052478 (-) True AMCG00008611
AMCG00008612 mRNA downstream 314129 5949316 ~ 5951869 (-) True AMCG00008612
AMCG00008610 mRNA downstream 331296 5924564 ~ 5934702 (-) True AMCG00008610
AMCG00008608 mRNA downstream 472003 5786620 ~ 5793995 (-) True AMCG00008608
AMCG00008609 mRNA downstream 479703 5655689 ~ 5786295 (-) True AMCG00008609
AMCG00008615 mRNA upstream 25562 6321401 ~ 6331672 (-) True AMCG00008615
AMCG00008613 mRNA upstream 77685 6373524 ~ 6376656 (-) True AMCG00008613
AMCG00008620 mRNA upstream 95305 6391144 ~ 6397022 (-) True AMCG00008620
AMCG00008622 mRNA upstream 120101 6415940 ~ 6470733 (-) True AMCG00008622
AMCG00008621 mRNA upstream 224692 6520531 ~ 6556299 (-) True AMCG00008621
TU62870 other downstream 380548 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 473414 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2488644 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3357333 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4180992 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 652050 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 849786 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1605496 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1838742 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1973184 8269023 ~ 8269326 (-) True G50710

Expression Profile