RNA id: AMCG00008615


Basic Information

Item Value
RNA id AMCG00008615
length 1347
RNA type mRNA
GC content 0.43
exon number 10
gene id AMCG00008615
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6321401 ~ 6331672 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTTGATGAATGTTCCAAAAATGCTTCGCTCTGTGGATTAAATGCAGAGTGTTTCAACAAAGGTGGAGGATTTGACTGTGCATGTAAACAGGATTATCTTCCCTCCCCTGGACTTGATTGGgaatttggaaaaacaaagtGTGTGAAGCCAAACTGCCCAGATaatgcTCTAAAGGAGCTATGTCTTTCCAATATtgttctggaaaaaatgaaagcaaatccAAACATGGTTCTACCAGAAATGGTTAAAGTTAGCTTGACAGCCATTGGACCTGACACAAACTTGACCACAATCCCTATTCTGGAAGCTAAAGCAAATGTTATGGAAATCAATCTGCTAAGCATTGCCAAGCACAATAATGGTTCTGCAGCAGCAATTTTCATTTCCTACTCTGATGGTGCTACAGATTCCTTATTACGTGCTGACTTTCTCAAGACTGAAAATGTAACCGAGATGTTTTCAGATGTTGTATCGGGAAGAATAGCCAAAACACCAATCACAAATCTCTCAGAGCCTGTTAATTTCaccttaaaacataaaatgTCCAAAGCAGATAATGGTCTGATGACCTGTGTCTACTGGAAAATATCAGATGAAGAACAGTTTTGGTCTGTTGAAGGCTGCACAGCAACATTCTCCAACACAACGTACACTGTGTGCAGCTGTACCCATCTCTCCACCTTTGCCTTAATAATGCAAACGGAGAGAGTGGTCCAGAATGATGACTTGCTGGACCAAATCAACAAAGTGCTTGTGATAATAGGTCTGTTTTTCTTCGCCTTGGCCATTATAACCTTTGTTTTCTGCCGCTGGAATCCAAAAATCAACAACACCGCTCGCCTCAACCTCTGTATCTGCCTCTTCCTGGCTCACCTTATCTTTCTGGTTGCGGTGTCTCACACAGAGAACAAGGTGATTTGTTCAATCATAGCTGGGGTCCTGCACTATCTGTTCCTGTCTGCCTTTGTGTGGATGTTTCTGGAGTCGATTCAGCTATTTCTGCTGGTGAGAAGTCTGACCAAAGTGAGGATCATCCATAGAGAAGGGCTCCGGCCTCTATACCTGCTGCTGATTGGGTACAGCATCCCTGTTGTTGTGGTCAACTTTCTTCTCTTTGGTGCAATTATGTGGTGTATCCGATCTACTCTGATTAACATGAAGAGTGATGTCTCCCAAGTGAAAGACACTAGgataattattttcaaagctgtTGTCCAGTTTGTCATATTGGGCTGTGGCTGGATCCTAGGCTTCTTCCCAGGTACCCCTCTGTTATCTTACCTGTTTATCGTGCTCAACTCACAGCAGGGGACTTTTATCTTCATTGTTCACTGCCTGCTCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62872 lncRNA downstream 379874 5941195 ~ 5941527 (-) True G50268
TU62867 lncRNA downstream 535073 5660347 ~ 5786328 (-) False AMCG00008609
TU62874 lncRNA downstream 591358 5729050 ~ 5730043 (-) False AMCG00008609
TU62815 lncRNA downstream 711072 5608353 ~ 5610329 (-) False AMCG00008602
TU62707 lncRNA downstream 1491780 4827054 ~ 4829621 (-) False G50126
TU62950 lncRNA upstream 11004 6342676 ~ 6342964 (-) True G50337
TU62980 lncRNA upstream 294437 6626109 ~ 6627025 (-) True G50361
TU62977 lncRNA upstream 294700 6626372 ~ 6627025 (-) False G50361
TU62993 lncRNA upstream 315339 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA upstream 315969 6647641 ~ 6651297 (-) False G50372
AMCG00008614 mRNA downstream 25562 6265998 ~ 6295839 (-) True AMCG00008614
AMCG00008611 mRNA downstream 268923 6049816 ~ 6052478 (-) True AMCG00008611
AMCG00008612 mRNA downstream 369532 5949316 ~ 5951869 (-) True AMCG00008612
AMCG00008610 mRNA downstream 386699 5924564 ~ 5934702 (-) True AMCG00008610
AMCG00008608 mRNA downstream 527406 5786620 ~ 5793995 (-) True AMCG00008608
AMCG00008613 mRNA upstream 41852 6373524 ~ 6376656 (-) True AMCG00008613
AMCG00008620 mRNA upstream 59472 6391144 ~ 6397022 (-) True AMCG00008620
AMCG00008622 mRNA upstream 84268 6415940 ~ 6470733 (-) True AMCG00008622
AMCG00008621 mRNA upstream 188859 6520531 ~ 6556299 (-) True AMCG00008621
AMCG00008625 mRNA upstream 259561 6591233 ~ 6600261 (-) True AMCG00008625
TU62870 other downstream 435951 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 528817 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2544047 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3412736 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4236395 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 616217 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 813953 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1569663 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1802909 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1937351 8269023 ~ 8269326 (-) True G50710

Expression Profile