RNA id: AMCG00008616


Basic Information

Item Value
RNA id AMCG00008616
length 1335
RNA type mRNA
GC content 0.37
exon number 11
gene id AMCG00008616
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6030847 ~ 6045870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaatatgcattctTAAAGAGAGGACATCATTCCGCAGATGGTAAAAATTGCCGCTATCAGTTAATTTGGCTTTTGAATGTACTTGACTTTACCAGATGGCAATGTTTCAAAAAGCGTCTTTCCATAAATGGGATGTGAAAGGAAACCCAGCCTCAGAAGAAGTAAACACTGAACATAATACAGCAGAATTCCAAGGAACAGAGGAAGTaagtgaaatatttgaagaaaacagAGACACCctaaaaagcaaaagaagaaaacacatgCAAAatttttttgaaTGGTCTCACTTTCTTGGTAGCTGCAAGAACACAGGCTTTTTGTGTCTTGGCATCTTGCTGCTTACTGGATCCATCATTCTGACTTCAATGCTATTCACAAAATATTCAACTATGAGAGAAGAGATTCAGCATTTAAGAATGACACATGGGACCTGGACAAATAACAgTTCTAATGCAATGCAAAACCTGAAATCGGAGCAAACAAATTTGAATGCAGAAGtATCCGAGATCCTGTCCCAAATGAAGACTTTAGAGATGCAACTGAAATCACAAGAGTCTGTGATCCTGAAGAACCTACAATCCCAGATTGAAACCCTAGattCCACAGCAATATCTCAAGTGAAGACTTTAGAATCCAAATTTCAAACTCAAGTGTGTCTTTCAGTCTTCTGTCCATGTGGATGGAAGTACTACAATGGGAAATGCTACTACttttctacagaaaacaaagactGGGATCAGGCTAACGATGCATGTAGACAAAAGGGTGCCTCCCTTGCCATGGCTAAGAGTGAGGACACACTGATATTTTTAAGCCACCAAATTACATCAAAATATTGGATGGGTTTGCATGACCAAGGCCTTGAAGGGACATGGAAGTGGGTGGATGCAACCTCTGTAAACATGACTGCGGGATTATGGAACCCAGGCGAGCCTAACAATCATAGCAATGAAGACTGTGGAGAGATAGAAGATAAAAAACTGAATGACAGTATTTGTGGCAACAGGCAGCGTTGGATCTGTGAGAAGGATTTTTAACaagctcttaaaaaaaaaaaaaaaactgcatacaGATGACATCCCCAGTAACTTAGctgagcatttgtttttaacaaaggTAATATGATTCACATGGACTAACAGTCAATTATGTCTGTAAGTTGAAGACAGTTTAAACTGCCTTCTGTGGttactattttgttttacaatctttaaataataccttgaacttttttgttttaattgatcatttgtatGAGTAGTGGCTTTACTGACAAAGTGCAAATTAATaaactgttattaataataaactaattatgataaaccacat

Function

GO: NA

KEGG:

id description
K10063 ASGR1; asialoglycoprotein receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62856 lncRNA upstream 89320 5941207 ~ 5941527 (+) True G50255
TU62809 lncRNA upstream 435795 5594712 ~ 5595052 (+) True G50214
TU62808 lncRNA upstream 437916 5592436 ~ 5592931 (+) True G50213
TU62807 lncRNA upstream 439646 5586800 ~ 5591201 (+) True G50212
TU62800 lncRNA upstream 450825 5579222 ~ 5580022 (+) True G50206
TU62949 lncRNA downstream 296824 6342694 ~ 6342978 (+) True G50336
TU62953 lncRNA downstream 326562 6372432 ~ 6372911 (+) True G50340
TU62955 lncRNA downstream 328795 6374665 ~ 6375034 (+) True G50342
TU62960 lncRNA downstream 444787 6490657 ~ 6518591 (+) True G50346
TU62981 lncRNA downstream 583568 6629438 ~ 6629646 (+) True G50362
AMCG00008604 mRNA upstream 147799 5881993 ~ 5883048 (+) True AMCG00008604
AMCG00008607 mRNA upstream 183166 5844345 ~ 5847681 (+) True AMCG00008607
AMCG00008605 mRNA upstream 254165 5766764 ~ 5776682 (+) True AMCG00008605
AMCG00008606 mRNA upstream 273212 5744804 ~ 5757635 (+) True AMCG00008606
AMCG00008601 mRNA upstream 395099 5614919 ~ 5635748 (+) True AMCG00008601
AMCG00008617 mRNA downstream 63093 6108963 ~ 6119352 (+) True AMCG00008617
AMCG00008618 mRNA downstream 142624 6188494 ~ 6207751 (+) True AMCG00008618
AMCG00008619 mRNA downstream 259856 6305726 ~ 6363030 (+) True AMCG00008619
AMCG00008626 mRNA downstream 646875 6692745 ~ 6719091 (+) True AMCG00008626
AMCG00008629 mRNA downstream 701841 6747711 ~ 6748885 (+) True AMCG00008629
TU62843 other upstream 288097 5738541 ~ 5742750 (+) True G50243
TU62810 other upstream 434048 5596023 ~ 5596799 (+) True G50215
TU62655 other upstream 1458113 4561991 ~ 4572734 (+) True AMCG00008580
TU62530 other upstream 1865364 4162058 ~ 4165483 (+) True G49982
TU62528 other upstream 1870785 4156088 ~ 4160062 (+) True G49980
TU63090 other downstream 911741 6957611 ~ 7018125 (+) True G50448
TU63267 other downstream 1887959 7933829 ~ 7939771 (+) True G50583
TU63268 other downstream 1887959 7933829 ~ 7939771 (+) False G50583
TU63407 other downstream 2267555 8313425 ~ 8317602 (+) True AMCG00008664
TU63473 other downstream 2404296 8450166 ~ 8666548 (+) True G50747

Expression Profile