RNA id: AMCG00008623


Basic Information

Item Value
RNA id AMCG00008623
length 4862
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00008623
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6666863 ~ 6674622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaactgtttttttttttttttttttttgtacgaCACCAACTGTGGGCATATGCCTGAATGAAGACGTGTCTTTTTTCTGGTTTAAATTCGTAGCTGTCCATAGTGCTTTGTTGTAATGGGTAAAGATTACTACAAGGTGTTGGGTATACAGAAAGGGGCATCCGACGACGAGATCAAGAAGGCTTACCGCAAACAGGCTTTGCGATACCACCCAGACAAGAACAAGTCTCCAGATGCGGAGGAGAAATTCAAAGAGATTGCAGAGGCCTACGATGTTTTAAGTGACCCCAAGAAGAAAGACGTCTATGATAAATTCGGAGAGGAAGgacTGAAGGGAAGTTCAGGAGGTAGTGGACCAAATGGCACCAGCTTCAATTACACATTCCACGGGGACCCCCATGCCATGTTTGCAGAGTTCTTTGGGGGTCACAACCCCTTCGACTCATTCTTTACTCGCAACGGGGGAGATGAGGACATGGACATTGATGACCCTTTTGCTGGGTTTGGTATGGGAGGAATGGGGGGCATGGGAGGGTTCCAAAGAAGCTTCACACGCATGGGGGGGCGTAACATGCGTGAAGGTATAGTGAAGAAGCAGGATCCGCCTGTTGTGCACGAATTGAAGGTGTCCCTGGAGGAGATTTTTGCGGGCTGCACCAAGAAGATGAAAATCTCCCACAGGAGGCTGAATCCAGATGGCCGCACCACACGCACTGAGGACAAGATCCTGACCATTGAGATCAAACGTGGCTGGAAGGAAGGCACCAAGATCACATTCCCCAAGGAGGGTGATGAAACGCCAACCAACATCCCAGCGGACATTGTTTTTGTGGTGAAAGACAAGGCACATCACTTGTTCAAGAGGGAAGGATCAGACATCACCTACCCAGCCAAAGTCACACTCCGGGAGGCTCTATGTGGTTGCACTGTAAACGCTCCCACACTGGAAGGCAAGACCATCCCTGTTTCCTTCAAAGACATTATCAAGCCAGGAATGAAGCGGCGCATCTCGGGGGAGGGATTGCCACTCCCCAAATGTCCAGAAAAGCGCGGGGATCTGGTCCTTGAGTTTGAGGTGAAATTCCCAGATCGAATACCCCAGAGCTCTAGGGAAGTTTTGAGTCAGGTGCTCCCTGCATAAAGCCTTCACAGAGGACGCTGCAAGTTGAAAGACTGTCAAAGAGTGCTGCTTAACACCACTTATGGCCAAATCTGCACTTTCATTCATCAGGACAGAAGTAAAAcatctttttcagtttttattttttttatttttaaatttccattCATAATGCAACCACCACATCAAGCATCCCATCATTAAAATCTGTAAAGaacttaaagaaaataactttgGATTGTTTCCTGAGAGCCATCTTGATACTGCATGGTTTTGATATCAGATTACCTTCATAGCTGTTGATTCTCACAATTACTCTTAAATGTTAATAACTCTTAAGGTACTTGGTCCGTTTCACACTGGTTTAAGAATTTCAATCTTTTTACATCATGCAGTCTATTTACAAGGTGACATCAAGTTGTGAACAATAAACGCTACTTATTCACTTCTTAAAGATCGACCATCTCAGACTTCCATGCTGCTCAACCACGAAGCAtagatattttaataacagtttttttttatagctaTAGTGATGGGATGTAGGACGTTATGGACTTGGAAAGACTCCTTCTTCTTGGAGGAAGGAAACGTAGCATCCTTCTTAGAAAAAGTGGGTTGGGGGATTACAAGTTTTGGGTCAGGTATGTTGGGGCAGGTTTATCTGAATTCTGAATTTCAGCCTGTAATGTACCCcttactgttttttattttattagtattttctaATATAAGTGAGCAAGACCCTTGTGATGGATTGCCTGTCTTTTGTCCACAGATTCAAACAATGTTCCATGaactggcatttttttttttttttattaccgGTTATAGAACTTGGCAAGGAAAGCTTTGTTATTATACAGACCGAATGATTAAAGCTCTAGAAAAGCTCCTTAAGGAGAACATTCCCAGGTTGTTTTTGCTTAGTTTAAATTAATGAGTTCATCCAGTTGCTGCTTTCCTCCAGCAATGGACTTGGGCTACTGGTGTTAAATATggaaactgttttgttttttaaatcttttaaatgtgtatttctttgtttgtgtgacAAGATGAGTGACAGGCATCTATATGAAAGCTAAAGTATGCCTTAATatagctttaaaatgtatttatataattgataGTGCTTCTTACCATCTTAAAAGAAGGTAGAAGTCCTAAGCACTTATgcaaaactgaatgaaaaatacagttGAGAGGCCAGATTTCAACAGTATTGTTTTGGAAAACTAAAGGACTTTATTTCATGGATTGTTTACTCCACTGTGTGTGGTCTATTAAAAAAGCTCAGAcactatttcaaattatttacaGATACTGACACAGGATCTTGTACATCTTGAGACCTGTATATACacttctatttttattaaattcagtttcattCAGCATTGCTTTGAATGTTCAGCAGCTGCAGTTTGGGTACCAGAGTAACCTGGATAGTCCAAAGCAGATGTGAAAAGATAACATTCTGGTGAACTCGCTCACTGTGTATTATtgtgagatttttatttttccactaaATTGCTATTTTCAACCAGAAAGGATGaatgaatgttttcaaaatgtaaaaaaaaatcaccttctAGTAACCTGTTTGAGTGTGAACCTGGTAGCCAGCTGAAGAAAAACAGTGATTCTTGtactggaaaaaaactaaaaacaacctGTTGAATGGGTCTTTAAAAGACCACCTGTGTGAATGTCAGTTGAACCTGTGTGACAcatgtgaatgtttttaaagcagtCACCTGGCCCTTTACTTCTCAGATTGTGGAGATGGTTTAAGATTAGTTTATTGATATGCATAGTTGTAGATTCAAGCCATTCTATTTCATTTATAAGCAAATAGGAACAGAATTAAACTGGAAATTTGAAAAGTAATATTCAGATGGAGGTTGTTAATCCCAGTTTCTCGAAGCTTGCATGGTTTTCCAGTTTATATTCTAGATTACTCTTGCCTATTTTATTATGTTGATTGTAAAGATAGACTTGGTGTAAGGTGCAGTTCCTATGAAAAATCTGCAGTGACGTTTTGTTCTAttcattgatttgatttttgtcCAGTACAAGTTGGCATATAAAAGGCAATATGACTACATATATTAGGGGGTGAGAAAAGGATCTGCACTTGAAAATGAATTGACTGTACTGCTCAAGCATGTTGATCTTGAAAGAAAATCTGTTCTTTACCCATCTGAGAATTATGTGGCCAGATTTTATCCCTGGTATGGGAGGGGGGCAGAGAGAACCCATGGGTGATTAATACATACTCCTTCTTCATTTACAAACCGTTAAAGACTTGAATTTCAAGGCccttacatttgcattttgtaaccAGTGAGGTCATTGTTAGCCACAGCTTTTTGTGTAAACCTGAAAGCAAGTGGAATGATCAATTCCTTTTAGCTCAGTTTAGCATGTTGCTCCAGTGAGGTTCGATTTTCCTTTGCCGAaccagttacattttttatatatgtatatttttttgttacatttgttgGAGAATTTGTTGTATGCCTGTACTTAAACCAAAATCACACCAATTCTCCATTATGGCAAGTCACATGcaaaaagtatttgaatttatttgcTTTCTTAATTTCTAAATTCCTACTGGCTCATGGGAGGAGTGTGACTCACTATCCAGTACAGTTCTGACTATCGGTCTCATAATTTTGCCATGAAACAATAACAAAGCAGAAGTATGACTATAAGGCATACCCTGAGGAGTAGTGGTTCAGATCAGTAGTTCttaaccctggtcctgaggAACCCTTGTCTTCTGTTGTGTGTTCCAACCAACTCTCAATCTCCAAGAGTGATTTGAGTCTTGAATTGGTTATTTAAACTGCTCACCTTTAATGAGAGGAATTCTGAAACCTGGAACATTATATAGTCTACAGATGCCAAATGTCTCTTAAGATCTTAAAGTTTTATTAAAGGTCTTATGaaccaaatattaaaaattcaaAGGGGTTGATTAGAGATCAGGATCGCAAGTGGAACAATGACAGATGATACAGGCAGCCTCAGCTCCAGGGTTGACAGCCTTATGTGTAGATAAACTGATGAACACTGAGATTAATTGTTATGGTTTTAATTGTCTTGCCTCAGCGTTGGCAGgccatttaaaatcaagtaaGATTGACATGCAGTAGCACCCTGTTCATACGGTATCATTAATGCTTGATGATCAAGTGTTGatagtattgttattaaaagcttttattAATGTCCCATGAAGTATGGGGCATGCATTATTTCAGTAGTATGATCTGGGTGTGATTTTGTTTGGGGGGGCTACAGAAATGCTTGCTAAAATGAGTGAATTTGGAAAGAATTCTACACTCCTATATTCATTCCAGAAAAAGGGCATGGACTCTCTTAAAGCTTGTgaaattaacatgttttcacTTAATTTGGGagtttccatttgtatttttaaatgttgcacaCTTAGAGAAAGTGTTTAGTATTTGTAAAAAGGGCAATGGAGATGAGGATTCCTCTACAGGAATGTGCCATTGTAATCTTGCTTATGTAAGAGTCTTTCAGAGGCAGTGAGTGCCtagactttttttctcatttatcaCCCTTGTTCAGAAAGCAAGAATTGCAATTTTATGTATTGTTGGTTGTAATATTTGTCCATTATGtaatgtatgttgtattttgaatgacTGCTCtttgatttaactgaaataaagctttttattgtaaaaaaaaaa

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09507 DNAJB1; DnaJ homolog subfamily B member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62993 lncRNA downstream 15520 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA downstream 15566 6647641 ~ 6651297 (-) False G50372
TU62980 lncRNA downstream 39838 6626109 ~ 6627025 (-) True G50361
TU62977 lncRNA downstream 39838 6626372 ~ 6627025 (-) False G50361
TU62950 lncRNA downstream 323899 6342676 ~ 6342964 (-) True G50337
TU63004 lncRNA upstream 18184 6692806 ~ 6706289 (-) True G50381
TU63071 lncRNA upstream 164455 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA upstream 167905 6842527 ~ 6885687 (-) True AMCG00008633
TU63077 lncRNA upstream 229455 6904077 ~ 6904389 (-) True G50435
TU63079 lncRNA upstream 230718 6905340 ~ 6905577 (-) True G50437
AMCG00008624 mRNA downstream 7619 6651424 ~ 6659244 (-) True AMCG00008624
AMCG00008625 mRNA downstream 66602 6591233 ~ 6600261 (-) True AMCG00008625
AMCG00008621 mRNA downstream 110564 6520531 ~ 6556299 (-) True AMCG00008621
AMCG00008622 mRNA downstream 196130 6415940 ~ 6470733 (-) True AMCG00008622
AMCG00008620 mRNA downstream 269841 6391144 ~ 6397022 (-) True AMCG00008620
AMCG00008628 mRNA upstream 41487 6716109 ~ 6719084 (-) True AMCG00008628
AMCG00008627 mRNA upstream 45960 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008631 mRNA upstream 124141 6798763 ~ 6804508 (-) True AMCG00008631
AMCG00008630 mRNA upstream 145342 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008633 mRNA upstream 172957 6847579 ~ 6862818 (-) False AMCG00008633
TU62870 other downstream 781413 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 874279 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2889509 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3758198 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4581857 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 273267 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 471003 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1226713 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1459959 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1594401 8269023 ~ 8269326 (-) True G50710

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU86423 False 476 lncRNA 0.56 1 NC_047598.1 28914783 ~ 28915258 (+)