RNA id: AMCG00008628


Basic Information

Item Value
RNA id AMCG00008628
length 510
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00008628
representative True

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6716109 ~ 6719084 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGCGGAAGGGCTTGCTGTGCTTTGTGCAGGGACAGTGGAGGTCACCCACAAAACCGGAGAAGAAACATAAAGTGGTGTGCGGTGTTTATGTGAGAGACAGCAGGGCACTAACAGGCTAGGTCTGAGAGCCTCTCCACCGCCATGGGAGCTCATCTCGCCCGCCGGTATGTGACCAATTCGGACACCGAACCGGACCCTCTGAAACCCGCAGGTTTCCCCTCCGATTTAGGCTTTGAGGAGAGGAAAGAGCGagTGATGATAGCAACTCAGCAGCAGATGAATGAAGCCCAGTTACCTGTGGAGCAGCGGGATTACTGCGCTCACCATCTCCTGAAGCTGATGAAGTGCAAAAGAGATAACTGGCCCAACTTCCTGGCCTGCAAGCATGAGCGTCATGATTGGGATTACTGTCAGCATGAAGACTATGTAATGAGGATGAAGGAGTTTGAGCGAGAGAGACGGCTGCTGATGAGGAAGAAGAGGATAGAGGAAGCCCAGGCTGCCTGA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function

KEGG:

id description
K03963 NDUFB7; NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63004 lncRNA downstream 9820 6692806 ~ 6706289 (-) True G50381
TU62993 lncRNA downstream 64766 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA downstream 64812 6647641 ~ 6651297 (-) False G50372
TU62980 lncRNA downstream 89084 6626109 ~ 6627025 (-) True G50361
TU62977 lncRNA downstream 89084 6626372 ~ 6627025 (-) False G50361
TU63071 lncRNA upstream 119993 6839077 ~ 6885687 (-) False AMCG00008633
TU63069 lncRNA upstream 123443 6842527 ~ 6885687 (-) True AMCG00008633
TU63077 lncRNA upstream 184993 6904077 ~ 6904389 (-) True G50435
TU63079 lncRNA upstream 186256 6905340 ~ 6905577 (-) True G50437
TU63139 lncRNA upstream 205844 6924928 ~ 6925980 (-) True AMCG00008634
AMCG00008623 mRNA downstream 41487 6666863 ~ 6674622 (-) True AMCG00008623
AMCG00008624 mRNA downstream 56865 6651424 ~ 6659244 (-) True AMCG00008624
AMCG00008625 mRNA downstream 115848 6591233 ~ 6600261 (-) True AMCG00008625
AMCG00008621 mRNA downstream 159810 6520531 ~ 6556299 (-) True AMCG00008621
AMCG00008622 mRNA downstream 245376 6415940 ~ 6470733 (-) True AMCG00008622
AMCG00008627 mRNA upstream 1498 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008631 mRNA upstream 79679 6798763 ~ 6804508 (-) True AMCG00008631
AMCG00008630 mRNA upstream 100880 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008633 mRNA upstream 128495 6847579 ~ 6862818 (-) False AMCG00008633
AMCG00008632 mRNA upstream 189690 6908774 ~ 6915444 (-) True AMCG00008632
TU62870 other downstream 830659 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 923525 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 2938755 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3807444 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4631103 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 228805 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 426541 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1182251 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1415497 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1549939 8269023 ~ 8269326 (-) True G50710

Expression Profile