RNA id: AMCG00008633


Basic Information

Item Value
RNA id AMCG00008633
length 663
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00008633
representative False

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 6839077 ~ 6885687 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgAACACGGCCTCCCTGGACCAGTTTGAGCGGATGAAGACTTTGGGAACAGGATCCTTTGGCCGTGTCATGCTTGTGAAACACAAAGATACGGGGCAGCACTATGCCATGAAAATCCTTGATAAACAGAAGGTGGTGAAGCTCAAACAAATTGAACACACACTGAATGAGAAAAGAATCCTTCAAGCAGTGAGCTTTCCTTTCCTTGTCAGAGTGGAGTACTCCTTCAAGGACAACACTAATCTCTACATGGTGATGGAGTATGTTCCTGGAGGGGAGATGTTTTCACATCTAAGGAGAATTGGCAGGTTTAGTGAGCCTCACGCACGATTTTATGCTGCCCAAATTGTGCTGACCTTCGAGTATCTGCATTCACTGGACCTCATATACCGAGACCTGAAGCCAGAGAACCTTCTAATAGACCAACAAGGCTACATACAGGTAACAGATTTTGGGTTTGCCAAGCGTGTGAAAGGCCGGACCTGGACACTGTGTGGCACTCCAGAATATCTGGCTCCTGAAATCATCCTGAGCAAGGTTGAGGCTCCATTCATCCCTAAATGCAAGGGGCCTGGGGACACCAGCAACTTTGATGACTACGAGGAAGAGGAGATCAGAGTCTCCTTCACTGAGAAGTGTGGAAAGGAGTTTGCCGAGTTCTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63004 lncRNA downstream 141290 6692806 ~ 6706289 (-) True G50381
TU62993 lncRNA downstream 196236 6647011 ~ 6651343 (-) True G50372
TU62994 lncRNA downstream 196282 6647641 ~ 6651297 (-) False G50372
TU62980 lncRNA downstream 220554 6626109 ~ 6627025 (-) True G50361
TU63077 lncRNA upstream 41259 6904077 ~ 6904389 (-) True G50435
TU63079 lncRNA upstream 42522 6905340 ~ 6905577 (-) True G50437
TU63139 lncRNA upstream 62110 6924928 ~ 6925980 (-) True AMCG00008634
TU63163 lncRNA upstream 503807 7366625 ~ 7366930 (-) True G50496
TU63185 lncRNA upstream 516220 7379038 ~ 7379487 (-) True G50514
AMCG00008630 mRNA downstream 17880 6819964 ~ 6829699 (-) True AMCG00008630
AMCG00008631 mRNA downstream 43071 6798763 ~ 6804508 (-) True AMCG00008631
AMCG00008627 mRNA downstream 105350 6720582 ~ 6742229 (-) True AMCG00008627
AMCG00008628 mRNA downstream 128495 6716109 ~ 6719084 (-) True AMCG00008628
AMCG00008623 mRNA downstream 172957 6666863 ~ 6674622 (-) True AMCG00008623
AMCG00008632 mRNA upstream 45956 6908774 ~ 6915444 (-) True AMCG00008632
AMCG00008634 mRNA upstream 57889 6920707 ~ 6933089 (-) False AMCG00008634
AMCG00008635 mRNA upstream 136736 6999554 ~ 7009561 (-) True AMCG00008635
AMCG00008636 mRNA upstream 350851 7213669 ~ 7276093 (-) True AMCG00008636
AMCG00008637 mRNA upstream 453308 7316126 ~ 7337849 (-) True AMCG00008637
TU62870 other downstream 962129 5748890 ~ 5885450 (-) True G50267
TU62882 other downstream 1054995 5787750 ~ 5792584 (-) False AMCG00008608
TU62371 other downstream 3070225 3774583 ~ 3777354 (-) True AMCG00008547
TU62046 other downstream 3938914 2906675 ~ 2908665 (-) True G49605
TU61772 other downstream 4762573 2078703 ~ 2085006 (-) True AMCG00008474
TU63135 other upstream 85071 6947889 ~ 7151472 (-) False G50476
TU63134 other upstream 282807 7145625 ~ 7151472 (-) True G50476
TU63287 other upstream 1038517 7901335 ~ 7902606 (-) True G50602
TU63350 other upstream 1271763 8134581 ~ 8135414 (-) True G50656
TU63425 other upstream 1406205 8269023 ~ 8269326 (-) True G50710

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000181_00571728_00584070.mRNA True 1542 mRNA 0.49 9 CI01000181 571728 ~ 584625 (+)